Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03564 ATGTTTTTCTTCAACAACGTCGACTCTGATTCTTCATCCTCTAGTGGTGAAATGGATTTACAAGAATCCACATACAATATTACATACAATGGGCACGTCAAAGAAGAAAATCCACCACCACCGGTATCAATTGCTCCAAAAACCCTAAATCAACAACCAACACCATTTAAACGAGAGAAGAGACTCTATAGAGGAGTGAGGACACAACCATGGGGAAAATATGCAGCAGAGATAAGGGACACAACAAGAAATGGTGTTCGTGTGTGGATCGGAACATTTGACATGCCTGAAGCCAGGGCCGGCCCAATGTAA 312 0.4263 MFFFNNVDSDSSSSSGEMDLQESTYNITYNGHVKEENPPPPVSIAPKTLNQQPTPFKREKRLYRGVRTQPWGKYAAEIRDTTRNGVRVWIGTFDMPEARAGPM 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03564 103 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Trre14g03564 103 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Trre14g03564 103 Pfam AP2 domain 63 99 IPR001471 GO:0003700|GO:0006355
Trre14g03564 103 PANTHER DNA-BINDING DOMAIN 26 100 IPR044808 GO:0003700|GO:0009873
Trre14g03564 103 SMART rav1_2 62 103 IPR001471 GO:0003700|GO:0006355
Trre14g03564 103 SUPERFAMILY DNA-binding domain 62 98 IPR016177 GO:0003677
Trre14g03564 103 Gene3D AP2/ERF domain 62 101 IPR036955 GO:0003700|GO:0006355
Trre14g03564 103 MobiDBLite consensus disorder prediction 30 56 - -
Trre14g03564 103 ProSiteProfiles AP2/ERF domain profile. 62 103 IPR001471 GO:0003700|GO:0006355
Trre14g03564 103 CDD AP2 63 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03564 Trre-Chr14 44221520 44221831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03564 59 100 AP2-EREBP Transcription Factor Family AT2G31230 71.429 1.65e-17 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre14g03564 AP2 6e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03564 K14516 - gmx:100818907 95.5153