Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03562 ATGAATGCAGAATTTCTCCTCGAGGGTTCTAAATTTGCTACTCGTGTTCAAAGGATTGACAAACTTCAGAATCGTAATTCAGGGACAACGAAGTCAAGGATTCAAAATAATTTGAAAAGGAAAAGGAGACGATGCACAAGAGTGGGAGTGGATAATGGCACTGAATCAGATCCTAATACAGTATTTTGTGAAGTTGAAAGGTTTGGGTTTGAACCTGGACCAGAATTTACCTTGGAAACATTTAAGAGATATGCAGATGAGTTTAAGGTCAAATACTTCAGAAATGATAATTTATCTCATCCAATTGCTAATACAACAATTGCAAGTGGTACCTCAGAGCCTTCTGTGGAGAACATTGAGTGTGAATACTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTAGAAACTGGGGTTTTTGGGAGTGGTTTTCCTATCAACTCTAGTCTAGTTTCTGATTCAAATGAACAGTACGTAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGTTACCTGGATCTCTGCTCTCTTATGAAACCGGTGATATATCTGGTATTTGGGAATGTGCTTTTCGTCATTTTGTTGGATGTTCCAATAGTGGATCGAATAGAAGGAAGCCTCATATGCTTGTTGGTTCTAGAAATAAAGCAAGCCTGTGTAGTGATATAGAATATAAAAGCCTGACCATTCCTGTTACATATGCTTCTGTGACAGGCGAGAAGGATGCTATTGCAGTGCGTCGTGAAGATTCGGTTAGAAGTATTCCAGATTCTTCAAGAGCAGATTCCGGTGGTCATAGTTTAGAAAGTTCAGAGGTTTGTCCTCCGAACCCACAACCTTCCGGCCCTATTAAGGCTAAGAACGAGGATAATCATGAGAAGTTTGATGGATGTTCCACTTCTAATGTAGTAGACAATGCAAGAGCTGTTATTGGAAATATCTCTTGTGGTCCAGACATTCACCGTCAGAAAGGTCCTCGTATTGCAAATGTTGTTCGGCGCATCAACTGCAATGTTGAGCCTTTGGAATTTGGAGTTGTGCTTTCTGGAAAATCATGGTGCAGCAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCTTGTTCGATGCATAAATATCTTAGATCCATGCAGTTCATGTTACTACACTTCAGAAATTCTTGATGATGGTGTGGTTTGCCTCTATTTATGGTTTCCTTGGAAAATAATCCAAGTGAGGTCTTCATTCATATGTCAGTGA 1260 0.3992 MNAEFLLEGSKFATRVQRIDKLQNRNSGTTKSRIQNNLKRKRRRCTRVGVDNGTESDPNTVFCEVERFGFEPGPEFTLETFKRYADEFKVKYFRNDNLSHPIANTTIASGTSEPSVENIECEYWRMVESPTEEIEVLYGADLETGVFGSGFPINSSLVSDSNEQYVKSGWNLNNFARLPGSLLSYETGDISGIWECAFRHFVGCSNSGSNRRKPHMLVGSRNKASLCSDIEYKSLTIPVTYASVTGEKDAIAVRREDSVRSIPDSSRADSGGHSLESSEVCPPNPQPSGPIKAKNEDNHEKFDGCSTSNVVDNARAVIGNISCGPDIHRQKGPRIANVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSLVRCINILDPCSSCYYTSEILDDGVVCLYLWFPWKIIQVRSSFICQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03562 419 MobiDBLite consensus disorder prediction 255 298 - -
Trre14g03562 419 Gene3D Cupin 1 199 - -
Trre14g03562 419 Gene3D - 345 405 - -
Trre14g03562 419 MobiDBLite consensus disorder prediction 264 282 - -
Trre14g03562 419 ProSiteProfiles FYR domain FYRN motif profile. 338 396 IPR003888 GO:0005634
Trre14g03562 419 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 193 - -
Trre14g03562 419 SMART fyrn_3 352 396 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03562 Trre-Chr14 44158148 44161653 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03562 304 397 JUMONJI Transcription Factor Family AT1G08620 64.646 3.66e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03562 K11446 - gmx:100800271 299.286