Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03560 ATGAATGCAGAATTTCTCCTCGAGGGTTCTAAATTTGCTACTCGTGTTCAAAGGATTGACAAACTTCAGAATCGTAATTCAGGGACAACGAAGTCAAGGATTCAAAATAATTTGAAAAGGAAAAGGAGACGATGCACAAGAGTGGGAGTGGATAATGGCACTGAATCAGATCCTAATACAGTATTTTGTGAAGTTGAAAGGTTTGGGTTTGAACCTGGACCAGAATTTACCTTGGAAACATTTAAGAGATATGCAGATGAGTTTAAGGTCAAATACTTCAGAAATGATAATTTATCTCATCCAATTGCTAATACAACAATTGCAAGTGGTACCTCAGAGCCTTCTGTGGAGAACATTGAGTGTGAATACTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTAGAAACTGGGGTTTTTGGGAGTGGTTTTCCTATCAACTCTAGTCTAGTTTCTGATTCAAATGAACAGTACGTAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGTTACCTGGATCTCTGCTCTCTTATGAAACCGGTGATATATCTGGTATTTGGGAATGTGCTTTTCGTCATTTTGTTGGATGTTCCAATAGTGGATCGAATAGAAGGAAGCCTCATATGCTTGTTGGTTCTAGAAATAAAGCAAGCCTGTGTAGTGATATAGAATATAAAAGCCTGACCATTCCTGTTACATATGCTTCTGTGACAGGCGAGAAGGATGCTATTGCAGTGCGTCGTGAAGATTCGGTTAGAAGTATTCCAGATTCTTCAAGAGCAGATTCCGGTGGTCATAGTTTAGAAAGTTCAGAGGTTTGTCCTCCGAACCCACAACCTTCCGGCCCTATTAAGGCTAAGAACGAGGATAATCATGAGAAGTTTGATGGATGTTCCACTTCTAATGTAGTAGACAATGCAAGAGCTGTTATTGGAAATATCTCTTGTGGTCCAGACATTCACCGTCAGAAAGGTCCTCGTATTGCAAATGTTGTTCGGCGCATCAACTGCAATGTTGAGCCTTTGGAATTTGGAGTTGTGCTTTCTGGAAAATCATGGTGCAGCAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCTTGTTCGATGCATAAATATCTTAGATCCATGCAGTTCATGTTACTACACTTCAGAAATTCTTGATGATGGTGTGGTTTGCCTCTATTTATGGTTTCCTTGGAAAATAATCCAAGTGAGGTCTTCATTCATATCTTGTCTGGTGTTTCATGATCTGGCGTCTCTGGTAGAGAATCTTATTTGTGGTATTCAACCTTGTGCTGTTATTTTTGGATTAGGAGTTTCTTATTCTCCAGCTTTTGGACAGTCGTCGTCGCGCCTGTTTGGCTCCTCTCAGTCAGTGTTTGGGCAGCAGGACAATTCAAGTAACAATCCTTCTGCTTCTATGCCATTTGGTAGTCCAATTCCATTAGGATTGCAAACAGGTAAGTCAAGTACTTCCGCAGGTGTATTTGGTGCAACTCAAACATTGTCACCCTTCTCTTCCAATACTACTTCCAGTGCTTCATCTTCACCAGCTTTCAATAGTTCAATGCATGAGGCATCTTCAACTTCAGCTTTTGGCGAGAAGGATGCTATTGCAGTGCGTCGTGAAGATTCGGGTTCGAGTTCAACTAAGCTTTTGCATGTAAAACAAGAATGTCACGAACAGACAAAACCAGTTAGAAGTATTCCAGCTTCTTCAAGAGCAGATGCCGGTGGTCATAGTTTAGAAATTTGTATTAGTTTTCTAATTCTATCTGATAACCAACTTTCTTCCTTCATAGGATTGTCAGCTTTTGGAGGATTTGGCTCTACTCCTACTCAAACAAACCCATTTGGTAGTTCCATCCAACCACCACAACCAGCATTTGGAAGTAACACCCAACAATCACAACCAGCATTTGGAAGAAGCATTTTTTATTCTTCAACACCTTTTTGCGCTTCATCCCAACCACTATTTGGTTCAATGAGCACTCCTGCATTTCGTGCAACGGACACTCCATTTCGTGTAAGATACTTGAATAATTATTGTAGTTTTTTGGTATCTTATCTCATTGTAACTGAGAGTGATCTTTTCATATTTTCTTATGCAGGATCACAGACTCTCACTCAAAAATCTGAAAATACTGGTATTGGGCCTTCAGAATTTGGACGTCAGCGGGGTGGAAGTAGAGTAGCTAGTTACTCAGATACAACTGAACCGGATGGGGGCTCTGGACAACCAGAAAAATTTGAGTCCATATCAACTATGTCTCTTTACAAAGATAAAAGCCATGAGGAGCTAAGATGGGACTTGGGAGGACTATCAATTGGGAGATAA 2361 0.4049 MNAEFLLEGSKFATRVQRIDKLQNRNSGTTKSRIQNNLKRKRRRCTRVGVDNGTESDPNTVFCEVERFGFEPGPEFTLETFKRYADEFKVKYFRNDNLSHPIANTTIASGTSEPSVENIECEYWRMVESPTEEIEVLYGADLETGVFGSGFPINSSLVSDSNEQYVKSGWNLNNFARLPGSLLSYETGDISGIWECAFRHFVGCSNSGSNRRKPHMLVGSRNKASLCSDIEYKSLTIPVTYASVTGEKDAIAVRREDSVRSIPDSSRADSGGHSLESSEVCPPNPQPSGPIKAKNEDNHEKFDGCSTSNVVDNARAVIGNISCGPDIHRQKGPRIANVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSLVRCINILDPCSSCYYTSEILDDGVVCLYLWFPWKIIQVRSSFISCLVFHDLASLVENLICGIQPCAVIFGLGVSYSPAFGQSSSRLFGSSQSVFGQQDNSSNNPSASMPFGSPIPLGLQTGKSSTSAGVFGATQTLSPFSSNTTSSASSSPAFNSSMHEASSTSAFGEKDAIAVRREDSGSSSTKLLHVKQECHEQTKPVRSIPASSRADAGGHSLEICISFLILSDNQLSSFIGLSAFGGFGSTPTQTNPFGSSIQPPQPAFGSNTQQSQPAFGRSIFYSSTPFCASSQPLFGSMSTPAFRATDTPFRVRYLNNYCSFLVSYLIVTESDLFIFSYAGSQTLTQKSENTGIGPSEFGRQRGGSRVASYSDTTEPDGGSGQPEKFESISTMSLYKDKSHEELRWDLGGLSIGR 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03560 786 Gene3D Cupin 1 199 - -
Trre14g03560 786 MobiDBLite consensus disorder prediction 718 758 - -
Trre14g03560 786 Gene3D - 345 414 - -
Trre14g03560 786 MobiDBLite consensus disorder prediction 255 298 - -
Trre14g03560 786 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 193 - -
Trre14g03560 786 Gene3D - 736 778 - -
Trre14g03560 786 MobiDBLite consensus disorder prediction 738 758 - -
Trre14g03560 786 MobiDBLite consensus disorder prediction 264 282 - -
Trre14g03560 786 ProSiteProfiles FYR domain FYRN motif profile. 338 396 IPR003888 GO:0005634
Trre14g03560 786 SMART fyrn_3 352 396 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03560 Trre-Chr14 44142088 44148277 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03560 304 397 JUMONJI Transcription Factor Family AT1G08620 64.646 5.72e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03560 K11446 - gmx:100800271 299.286