Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03554 ATGAAGAAGACAAGGCTATGTTGGAATCTGTATTGGGTTGCTGGTTTGAAATCCGGTGGTTATGTGTTGAAATACGGCGAGGGGCACTGTCAGGATCCCATTGGGGGTCCAAGGAATGATCAGGAAAGGGAGAGAGATGATGTTAGGAGGAAGGTGTTGGGGAAGATTCATGCTTGCTGGGGTGGATCTAATTCAATTGAGAATGTTTATAAGAAATTGGATACTGTCTCGGATTTGTATATGCTTTATTTGACCTCCGTTTACTATGTGTTTGGTTTTAATTCTCAGTATGGTCCTGGAAGTTCTTTTAAGTGTGCTAAACCGAATTGGTCTTCTGATGCTGGTAGTTGTTTAACTCAGTATGAGTCGAGGTCGTTTCTGGCTAAATCGGCTGGTTTTCAAACTGTTGTTTTTGTACCTCTTAAGGCTGGGGTTATCGAGCTTGGTTCAATGGAGATGGTGGCCGAAGATTTGGGTTTTTTGGATATGGTCAAGTCAGCATTTGGAGAATCTACTTCTGGACAGGCTAAGGCAGCACCGAAGATTTTTGGGCACGAGTTAAGCTTAGGGGATACAAAATCTCAGTCCATAACTATTAGTTTCTCCCCTAAGGTGGAAGATGATTCTGGTTTCACTTCCGACTCTTATGAAGTACAAGCGCTTGGGGCCAACCATGCTTATGGTAATTCTTCCAATGGAGGTGTAGGAGATAGTAATGATGCAAAAATGTTCCCTCAGTTAACTCAAATGGTTCCTGGGAATTTCACTTCTCAAGCAAGAGTTTCTTCTTCTATTGATTTGGGTAATGAAGACTCGTCCTCGCCTCTCGGAGACGAGCGGAAGCCTAGGAAAAGAGGGAGAAAGCCTGCCAATGGACGAGAGGAACCGCTGAATCATGTTGAAGCAGAGAGGCAAAGACGGGAGAAACTTAACCAGAGATTTTATGCCTTAAGAGCTGTTGTTCCTAACATTTCTAAAATGGACAAGGCTTCTCTACTCGGTGATGCTATAACCCATATCACTGATCTCCAGAAGAAGATTAAGCTGTTGGAAACCGAAAAAAGCATGGTTAACAATAAGGGCCAGCAGTTATCATTGCAAGATATCGATTTTCAGGCTAGACAGGATGACGCGGTTGTGCGAGTGAGCTGCCCCTTGGATACTCACCCGGTTTCTGGAATTGTTAAAGTATTCAAAGAGCATCAAATTGCAGCTCTAGAGGCCAATGTTTCAACTGCACAGGATAAGAACTCAAGGAGGGGAAGCAGCTGCTGTACAGTTGAAAGAAAAGCTCGAAGCATCTTTAGCCAAAAATTAACGGCGAAAGTATAG 1332 0.4347 MKKTRLCWNLYWVAGLKSGGYVLKYGEGHCQDPIGGPRNDQERERDDVRRKVLGKIHACWGGSNSIENVYKKLDTVSDLYMLYLTSVYYVFGFNSQYGPGSSFKCAKPNWSSDAGSCLTQYESRSFLAKSAGFQTVVFVPLKAGVIELGSMEMVAEDLGFLDMVKSAFGESTSGQAKAAPKIFGHELSLGDTKSQSITISFSPKVEDDSGFTSDSYEVQALGANHAYGNSSNGGVGDSNDAKMFPQLTQMVPGNFTSQARVSSSIDLGNEDSSSPLGDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKLLETEKSMVNNKGQQLSLQDIDFQARQDDAVVRVSCPLDTHPVSGIVKVFKEHQIAALEANVSTAQDKNSRRGSSCCTVERKARSIFSQKLTAKV 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03554 443 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
Trre14g03554 443 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 366 IPR036638 GO:0046983
Trre14g03554 443 PANTHER MYC 11 415 IPR045084 GO:0003700|GO:0006355
Trre14g03554 443 SMART finulus 300 349 IPR011598 GO:0046983
Trre14g03554 443 MobiDBLite consensus disorder prediction 273 305 - -
Trre14g03554 443 CDD bHLH_AtAIB_like 291 354 - -
Trre14g03554 443 FunFam Transcription factor bHLH13 287 361 - -
Trre14g03554 443 Pfam Helix-loop-helix DNA-binding domain 298 344 IPR011598 GO:0046983
Trre14g03554 443 Coils Coil 340 360 - -
Trre14g03554 443 Gene3D - 287 360 IPR036638 GO:0046983
Trre14g03554 443 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 168 IPR025610 -
Trre14g03554 443 MobiDBLite consensus disorder prediction 262 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03554 Trre-Chr14 44086904 44089221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03554 8 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 46.868 2.30e-129 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g03554 bHLH-MYC_N 6.4e-28 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03554 - - gmx:100819968 553.518