Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03544 ATGGAGCTAGCTTTGAGCTTAGGAGACACACCAAAACCATTTTCTTTTTTTGAAAACCCCAACAAAAGTTTCTCCATAGTACTTGAACAAGCTCAAAAATCCTTAGATGAAAAAAGAGGTTCATCAGATCCACCAATTCAGCTCAACCTTCTTCCTTCAACACCGGTTCCTCGTTCTCTTCCTTCTCATCAAATTCCTTGGCTCAACGATGCACTGGGTGTGGAACCGGCGAGGGTACCAAATGCAAACCGATTCCGGTTGGCGTCCATGGAAGATACTACGGACGAGGGAGCTGCGGTTTCATCCCCGAATAGCGCAGCGTCATCTTTTCGGATGGATTTCTCTATCATGAATGATAATGGTGATGCTAGAAATAGTAGCCGTGAGGGGGGTGTCGATAGCGATGATGAGGAAAATGGATCCACTAGGAAGAAACTCAGATTATCTAAAGAGCAATCAGCTTTTCTCGAAGAAACTTTCAAAGAACACACCACTCTCAATCCCAAACAAAAACTTGCTCTTGCAAAACAATTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAATTAAAGCAAACAGAAGTGGATTGTGAGTACTTAAAAAAATGTTGTGAGACTCTAACTGAAGAAAATAGAAGGTTACAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACTTCTCAACCATTCTACATGCAACTTCCAGCTACTACACTCACTATGTGTCCCTCTTGTGAGAGGGTTGCCACCAACACCACCGGAGCAGCTGCCACCAAACAAACCTCCTCGATCGCCGCCGGCGGGCGCCACCAATAA 840 0.4381 MELALSLGDTPKPFSFFENPNKSFSIVLEQAQKSLDEKRGSSDPPIQLNLLPSTPVPRSLPSHQIPWLNDALGVEPARVPNANRFRLASMEDTTDEGAAVSSPNSAASSFRMDFSIMNDNGDARNSSREGGVDSDDEENGSTRKKLRLSKEQSAFLEETFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTTGAAATKQTSSIAAGGRHQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03544 279 Pfam Homeobox associated leucine zipper 199 233 IPR003106 GO:0006355|GO:0043565
Trre14g03544 279 MobiDBLite consensus disorder prediction 116 148 - -
Trre14g03544 279 MobiDBLite consensus disorder prediction 126 148 - -
Trre14g03544 279 Pfam Homeodomain 143 197 IPR001356 GO:0003677
Trre14g03544 279 SMART halz 199 242 IPR003106 GO:0006355|GO:0043565
Trre14g03544 279 SMART HOX_1 141 203 IPR001356 GO:0003677
Trre14g03544 279 Gene3D - 147 197 - -
Trre14g03544 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 31 269 - -
Trre14g03544 279 FunFam Homeobox-leucine zipper protein 18 129 204 - -
Trre14g03544 279 Coils Coil 205 235 - -
Trre14g03544 279 ProSitePatterns 'Homeobox' domain signature. 174 197 IPR017970 GO:0000981|GO:0006355
Trre14g03544 279 ProSiteProfiles 'Homeobox' domain profile. 139 199 IPR001356 GO:0003677
Trre14g03544 279 CDD homeodomain 143 200 IPR001356 GO:0003677
Trre14g03544 279 SUPERFAMILY Homeodomain-like 130 200 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03544 Trre-Chr14 43946275 43947772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03544 133 276 Homeobox Transcription Factor Family AT4G37790 73.611 4.96e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre14g03544 Homeodomain 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03544 K09338 - gmx:100810885 335.495