Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03543 ATGGGGGAAGAAAATTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCTGACCCGGAACCACAAACTGGGTCGATAGCTAATGAAGCTTTGAATTTGGATGATTGGATTGAGGAGCCTCTTCAGCGAATTAGCGAAGCTGCTGCGAGGCTTAGGGGGAGACAGAGGTGGAGATGGAGGCAACTTCCAACATATCATCAACCAGTTCATCGCATTTTACCTCAACCCGCTTATGGTCAAGTTCGTCAAATTGTACCTGAACCTGCACACCATATTTATATCCCACCCGAAGCTCGCAATATATCTATCGAATTGAACAATTTTTTGGTCAATTCGGGTAATGGAACTGGATTACAGGCTGGGGAAGGAAGTGTAGCGGCTGTTGAGAGAATGGAGGAAGAGGAGGTGCCTGCACCGAAAGCGTGTGAGAACAACAATGGTGTTACGGAGGATGAGACGTCGCAGAAGAAGAAGGATGATGTTGAAAAGACTGGTAGCAATGACGGAGACTTTTTCGATTGTAATATCTGTTTGGACTTGGCCAAGGAACCTGTTTTGACTTGCTGTGGTCATCTGTTTTGTTGGCAATGCTTATATCGATGGCTGCATCTGCATTCAGATGCTAAGGAGTGTCCAGTTTGCAAGGGAGAGGTGACAATTAAGAATGTTACCCCTATATATGGCCGTGGGAACAATGCCCGAGTTCTTGAGGAGGATTCTGCTCTTAAAATCCCTCCTAGGCCACAAGCAAAGCGTGTTGAGAGTCTGAGACAAACTATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATTGATCTCACTAGGGATTTAGTTCAGCCAAATGAACCAGAAAATGCTCGTGGAACAGCAGAAAGAACCACTTCTTTGCTAAGTAGGTTTTTGACATCTCGAGGCATGCGTAGAGAGCAAAATCCTGTACCACCCCCAGATGATGTTGCTGACTTGAATCAGAACAATGTTAATGGTTCTGAGTTGGGAGGAGATAACCGCAGGGTGCAATCCCTTTTGCTTAGAAGATCACAATCACATAGAGCAACACTTTCTACTCTTTCATCGGCACTTACTTCTGCTGAAAGGTTGGTTGAGGCATATTTCCGTAGCAATCCATTAGGCAGAAACCAGGAACAACCACCTTCTTCAGTTGATGACAGAGATTCCTTTTCAAGCATTGCTGCTGTAATAAATTCAGAGAGTCAAGTGGATACTGCTGTAGAAATTGATTCCATGGTAACCTCTTCTAGGAGGAGAACCGATGCTTCAAGATTGTCTGATGTGGACAATCAAGTTATTACTATTCTGTCATATCATGTAACACATCAAAATAATTTTCCAACATCTATACATATTTCATGGAAGGTCAATGGCAATTCAGGCTCCTTATTTTCATTCTCAACATGCATTGCAAGTTATGCTTTCGGCGAAGTTGTTGTAGACAGTTATTTATATAATAGATAG 1503 0.4325 MGEENSDAMNLDLNLGPDPEPQTGSIANEALNLDDWIEEPLQRISEAAARLRGRQRWRWRQLPTYHQPVHRILPQPAYGQVRQIVPEPAHHIYIPPEARNISIELNNFLVNSGNGTGLQAGEGSVAAVERMEEEEVPAPKACENNNGVTEDETSQKKKDDVEKTGSNDGDFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDAKECPVCKGEVTIKNVTPIYGRGNNARVLEEDSALKIPPRPQAKRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDLVQPNEPENARGTAERTTSLLSRFLTSRGMRREQNPVPPPDDVADLNQNNVNGSELGGDNRRVQSLLLRRSQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPSSVDDRDSFSSIAAVINSESQVDTAVEIDSMVTSSRRRTDASRLSDVDNQVITILSYHVTHQNNFPTSIHISWKVNGNSGSLFSFSTCIASYAFGEVVVDSYLYNR 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03543 500 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 142 330 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre14g03543 500 MobiDBLite consensus disorder prediction 150 164 - -
Trre14g03543 500 Pfam Zinc finger, C3HC4 type (RING finger) 174 214 - -
Trre14g03543 500 CDD RING-HC_RNF5-like 172 215 - -
Trre14g03543 500 SMART ring_2 174 214 IPR001841 -
Trre14g03543 500 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Trre14g03543 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 264 IPR013083 -
Trre14g03543 500 MobiDBLite consensus disorder prediction 1 22 - -
Trre14g03543 500 MobiDBLite consensus disorder prediction 132 164 - -
Trre14g03543 500 FunFam Zinc finger family protein 155 228 - -
Trre14g03543 500 ProSiteProfiles Zinc finger RING-type profile. 174 215 IPR001841 -
Trre14g03543 500 SUPERFAMILY RING/U-box 170 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03543 Trre-Chr14 43913097 43915861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03543 1 442 C3H Transcription Factor Family AT3G58030 52.484 1.01e-128 380