Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03530 ATGATTTCGAAGGAAGAAATTAGAGTTTTGATTGAAGCTCTTTCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAAATATCCTTCAATTTCAGAAGAAATTGAAAGTTTTGCAAATGTTGATCGCACCCAACAAAAGCTTAATGCATTGCAAGTTCATGGAGAAATTGAGGAAGGGAATGTGATGCTTGATAGAGACACAGGAAAATCGGCTCAGAGTGCATTGACTGCACCAAGCAACTTCATTGATGGAGTAAGTAAGTTATCTGATGATGAGGGCCTAACCAAAACAACCAGTAGTGCTACTGATCTTTCGCAGAGAAATCTTTATATTGGAAACTTATCACGACAAGTAACAAGAGAAATGCTGCTCAACTATTTTGAGGGGCACGGTGATATAGAGGAATGTGTACTTGTATATCAATATAACAAGGATTTAAATATATCAAGTCGATCTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTCTTGGGGGAAGAACTATAACTGTAAAATATGATTTGCACAATGTTGGAGGTGGTCAGCCGTCTGTTCCTGCAAGAGTTGCACTGAATGCTAATGCACCTCCTTATCAAATGGAAGCCTTATCTATGACTCCAGAATATGTTGCACCGAATGCTAATGCACCTAATGCTGCACCTCCTTATCCATACCTCCAAACCAATGCACCACCTTTTCCATACCCCCAAACAGGTGCACCATATGCCGCATCTCCTTATCCATACCCCCAAACTGATGCATCACATGCTGCACCACCACCTTATCCATACGCCCAAACAGGTGCACGATATGCCGCGTCTCCTTATCCATACCTCCGAACTACTGCACTATATGCTGCATCTCCTTATCCAACTCTTCTCACAGCACCTTCTACTCAGTATTATTATTATCCTCAGTATTATAATCATCCCAACCCATGA 984 0.4167 MISKEEIRVLIEALSKPQLVDLLSQLGSKYPSISEEIESFANVDRTQQKLNALQVHGEIEEGNVMLDRDTGKSAQSALTAPSNFIDGVSKLSDDEGLTKTTSSATDLSQRNLYIGNLSRQVTREMLLNYFEGHGDIEECVLVYQYNKDLNISSRSGFVTYKTAEAAKNAIKDLDQSTLGGRTITVKYDLHNVGGGQPSVPARVALNANAPPYQMEALSMTPEYVAPNANAPNAAPPYPYLQTNAPPFPYPQTGAPYAASPYPYPQTDASHAAPPPYPYAQTGARYAASPYPYLRTTALYAASPYPTLLTAPSTQYYYYPQYYNHPNP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03530 327 SMART rrm1_1 111 186 IPR000504 GO:0003723
Trre14g03530 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 184 IPR000504 GO:0003723
Trre14g03530 327 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 49 282 - -
Trre14g03530 327 SUPERFAMILY RNA-binding domain, RBD 103 192 IPR035979 GO:0003676
Trre14g03530 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 190 IPR000504 GO:0003723
Trre14g03530 327 Gene3D - 90 203 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03530 Trre-Chr14 43798389 43800132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03530 102 171 C2H2 Transcription Factor Family AT2G19380 37.143 1.79e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03530 K12741 - gmx:100802911 204.142