Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03529 ATGATTTCGAAGGAAGAAATTAGAGTTTTGATTGAAGCTCTTTCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAAATATCCTTCAATTTCAGAAGAAATTGAAAGTTTTGCAAATGTTGATCGCACCCAACAAAAGCTTAATGTTTGTGACTTGGACTCAAAAACTTTGTATTCGGCATTGCAAGTTCATGGAGAAATTGAGGAAGGGAATGTGATGCTTGATAGAGACACAGGAAAATCGGCTCAGAGTGCATTGACTGCACCAAGCAACTTCATTGATGGAGTAAGTAAGTTATCTGATGATGAGGGCCTAACCAAAACAACCAGTAGTGCTACTGATCTTTCGCAGAGAAATCTTTATATTGGAAACTTATCACGACAAGTAACAAGAGAAATGCTGCTCAACTATTTTGAGGGGCACGGTGATATAGAGGAATGTGTACTTGTATATCAATATAACAAGGATTTAAATATATCAAGTCGATCTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTCTTGGGGGAAGAACTATAACTGTAAAATATGATTTGCACAATGTTGGAGGTGGTCAGCCGTCTGTTCCTGCAAGAGTTGCACTGAATGCTAATGCACCTCCTTATCAAATGGAAGCCTTATCTATGACTCCAGAATATGTTGCACCGAATGCTAATGCACCTAATGCTGCACCTCCTTATCCATACCTCCAAACCAATGCACCACCTTTTCCATACCCCCAAACAGGTGCACCATATGCCGCATCTCCTTATCCATACCCCCAAACTGATGCATCACATGCTGCACCACCACCTTATCCATACGCCCAAACAGGTGCACGATATGCCGCGTCTCCTTATCCATACCTCCGAACTACTGCACTATATGCTGCATCTCCTTATCCAACTCTTCTCACAGCACCTTCTACTCAGTATTATTATTATCCTCAGTATTATAATCATCCCAACCCATGA 1017 0.4149 MISKEEIRVLIEALSKPQLVDLLSQLGSKYPSISEEIESFANVDRTQQKLNVCDLDSKTLYSALQVHGEIEEGNVMLDRDTGKSAQSALTAPSNFIDGVSKLSDDEGLTKTTSSATDLSQRNLYIGNLSRQVTREMLLNYFEGHGDIEECVLVYQYNKDLNISSRSGFVTYKTAEAAKNAIKDLDQSTLGGRTITVKYDLHNVGGGQPSVPARVALNANAPPYQMEALSMTPEYVAPNANAPNAAPPYPYLQTNAPPFPYPQTGAPYAASPYPYPQTDASHAAPPPYPYAQTGARYAASPYPYLRTTALYAASPYPTLLTAPSTQYYYYPQYYNHPNP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03529 338 Gene3D - 101 214 IPR012677 -
Trre14g03529 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 195 IPR000504 GO:0003723
Trre14g03529 338 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 56 293 - -
Trre14g03529 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 201 IPR000504 GO:0003723
Trre14g03529 338 SMART rrm1_1 122 197 IPR000504 GO:0003723
Trre14g03529 338 SUPERFAMILY RNA-binding domain, RBD 114 203 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03529 Trre-Chr14 43798389 43800132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03529 4 83 C2H2 Transcription Factor Family AT2G19380 34.524 1.39e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03529 K12741 - gmx:100802911 214.157