Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03516 ATGGATATTCGCAAAAGAGGAAGACCCGAACATGGATTCAACACCAATGGTGGATTCAAGAAATCAAGACAAGAAATGCAGTCCTTGTCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGCTGCCCCTTTGGCGAGAGCTGCCATTTCTTGCACTATGTTCCTGGTGGTTATAATGCTGCTGCCCAGATGATGAATCTAACACCCGCAGCAGCTCCTGCACCCAGAAATGTCGCACCCCCACCACATGTACCTAATGGGTCCGCGCAATCTTCTGTTAAAAGCCGCATATGTAACAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTCGCCCATGGTGAATGGGAACTTGGGAAGCCTGTTGCTCTGTCATTTGACGACCACCGTGCCATGGGACCACCCAATGTAGGTCGTTTTGGTGGCCATCGGATGGAGCCCCCTCCTGGTCCAACTACCAGCTTCGGTGCCAACGCCACTGCCAAGATCAGTGTAGAAGCTTCTCTAGCTGGAGCAATCATTGGCAAGGGTGGTGTGAACTCAAAACAGATCTGTCGCCAAACTGGAGCCAAACTTTCAATTCGAGAGCATGAAGCTGACCCAAATCTTAGGAACATTGAACTTGAGGGGACCTTTGAACAAATTAAGGATGCAAGTAACATGGTGAAGGATTTACTGTTGACCCTGCAAATGTCTGCACCACCTAAAACATCCCAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCCATGGTGGTGCCCCTGGTCATCATGGAAGCAACTTTAAAACAAAACTGTGTGAGAATTTTGCAAAGGGATCTTGCACTTTTGGAGAAAGATGTCATTTTGCACATGGAGCTGCTGATTTGCGTAAATGA 909 0.4796 MDIRKRGRPEHGFNTNGGFKKSRQEMQSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAAAQMMNLTPAAAPAPRNVAPPPHVPNGSAQSSVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVALSFDDHRAMGPPNVGRFGGHRMEPPPGPTTSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHEADPNLRNIELEGTFEQIKDASNMVKDLLLTLQMSAPPKTSQGGGGGGGGGGHGGAPGHHGSNFKTKLCENFAKGSCTFGERCHFAHGAADLRK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03516 302 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Trre14g03516 302 Gene3D - 94 131 - -
Trre14g03516 302 Gene3D - 267 302 - -
Trre14g03516 302 SUPERFAMILY CCCH zinc finger 271 301 IPR036855 GO:0046872
Trre14g03516 302 MobiDBLite consensus disorder prediction 243 267 - -
Trre14g03516 302 CDD KH-I_AtC3H36_like 172 237 - -
Trre14g03516 302 MobiDBLite consensus disorder prediction 17 36 - -
Trre14g03516 302 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 153 IPR045877 GO:0003729
Trre14g03516 302 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 159 241 IPR036612 GO:0003723
Trre14g03516 302 ProSiteProfiles Zinc finger C3H1-type profile. 271 298 IPR000571 GO:0046872
Trre14g03516 302 Gene3D K Homology domain, type 1 165 266 IPR036612 GO:0003723
Trre14g03516 302 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Trre14g03516 302 ProSiteProfiles Type-1 KH domain profile. 169 233 - -
Trre14g03516 302 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Trre14g03516 302 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Trre14g03516 302 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Trre14g03516 302 FunFam Zinc finger CCCH domain-containing protein 266 302 - -
Trre14g03516 302 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Trre14g03516 302 MobiDBLite consensus disorder prediction 1 36 - -
Trre14g03516 302 SUPERFAMILY CCCH zinc finger 99 130 IPR036855 GO:0046872
Trre14g03516 302 SMART kh_6 168 238 IPR004087 GO:0003676
Trre14g03516 302 FunFam Zinc finger CCCH domain-containing protein 94 131 - -
Trre14g03516 302 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Trre14g03516 302 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 296 IPR000571 GO:0046872
Trre14g03516 302 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Trre14g03516 302 Pfam KH domain 172 234 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03516 Trre-Chr14 43680418 43683625 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre14g03516 KH_1 1.1e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03516 - - gmx:100803981 501.13