Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03508 ATGAGAGAAGTTTGGAATATAGGAGAAGGAGAATCAACAAAATCTTCAAATACAAACACAATTATGAGCCGTTTTGAGTCACCAGCTTCTGCTTTTTATGCAACAGAAAATTGCATGGGATTTGCAGAATTTGATAGCCAAGTTTGTAACAATAATAATCCATCTTTGAGTTCTCAATTATATAAGCTTAATGATTTGGAGTTACCTTTGTATCAATCTCTAAGGGAAAATAATCATTTCTTGGAATCATCAAATCAACTTGATCCCAACTTTGAATTTTCAAACACTTTGCAAGCATTGGTTAAATCTCAATTGAATGGTAATCAATGCCTTAGATCGCCAGAAAACTCGAATAAATTTTCGTATGAGAATTTTCCCGGAATTAAGTCCTTTCCAATTGAACAACAAAAGTTGTTTTTTGATGGTCTTGCCTCAGTTAACAACAGCTCATCATTTTGTAACAAAGACTATATGGTTGCTCAAGGATCTTATCATTTATCTGTTGAACAATTGAATTTCTCTTCTCATCATGAGAAGTTGTGTCCAACAATTTCAGCCGGAAGTTCATCGACTTCTCTTGGAAACACTACTTCTAATGGGAATGTAGTCTCGAGTAAAACACGAATTAGATGGACAAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTCGGAGGTGCTGATAAGGCAACACCAAAAGCTATATTAAAGATGATGGATTCTGATGTTTTGACCATATTCCATGTGAAAAGTCATTTACAAAAATATAGAACTGCAAAATTCATGCCAGAGTCAGTTCAAGGTAAATCTGACAAAAGAATGCATACAGAGGATCTGCATCATGTTGGTGTTAAAAGTGGATTTCAAATCAAGGAAGCACTTCAACTTCAATTAGATGCACAAAGGCGTCTTCATGAACAACTCGAGATTCAAAGAACATTACAATTGAGACTTGAGGAACAAGGCAAACAGCTGAAAGAAATGTTTGATAAGCAGCAGAAGACATGTAATAATCTCTTCAATACTCCAAATACAGTCAATGATGATGGTACAAAAATTAGTCATAAAGATGCTGAAGTTTCTATTTCTGAAGGGACTGAGAATTCATAA 1116 0.3477 MREVWNIGEGESTKSSNTNTIMSRFESPASAFYATENCMGFAEFDSQVCNNNNPSLSSQLYKLNDLELPLYQSLRENNHFLESSNQLDPNFEFSNTLQALVKSQLNGNQCLRSPENSNKFSYENFPGIKSFPIEQQKLFFDGLASVNNSSSFCNKDYMVAQGSYHLSVEQLNFSSHHEKLCPTISAGSSSTSLGNTTSNGNVVSSKTRIRWTKDLHEKFVECVNRLGGADKATPKAILKMMDSDVLTIFHVKSHLQKYRTAKFMPESVQGKSDKRMHTEDLHHVGVKSGFQIKEALQLQLDAQRRLHEQLEIQRTLQLRLEEQGKQLKEMFDKQQKTCNNLFNTPNTVNDDGTKISHKDAEVSISEGTENS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03508 371 FunFam Myb family transcription factor 205 263 - -
Trre14g03508 371 Pfam Myb-like DNA-binding domain 210 259 IPR001005 -
Trre14g03508 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 198 349 IPR044848 GO:0003700
Trre14g03508 371 Coils Coil 293 313 - -
Trre14g03508 371 Pfam MYB-CC type transfactor, LHEQLE motif 291 337 IPR025756 -
Trre14g03508 371 SUPERFAMILY Homeodomain-like 204 260 IPR009057 -
Trre14g03508 371 Gene3D - 205 264 - -
Trre14g03508 371 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 261 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03508 Trre-Chr14 43605088 43607641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03508 193 334 G2-like Transcription Factor Family AT4G28610 55.556 2.74e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre14g03508 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03508 - - cam:101504038 552.362