Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03504 ATGGATTCGAGTTTTTCTCTTTACAAAAACAAAGGTTTCCCTTACAAAAAGTATAATATCAAATTAGATGCAACGTTTGATAACGACCCTCTGGCGTGGTCTAGGCCACTGGTTAGGCATCACTGTGGCGAATTCTCCATGGCTGCAGTTAAGGCGAATATGGATATGGAAGATCAGAGCCAAGTTGAAGTTGGCACTGATGCACTCTTTGTTGGAGTTTATGATGGTCATAAAGGCGACACCACTGCCATCTATCTTAGAGATCATATCTTCGGGGAAATATTGAGGCGTATTCAGCAGAATATTAAGCATATGGATAATCGGGTTGTTAACTATTCTGATTCTGAGACTGTTCTGAGGGCGTATTCCGCAAACTACCAACGATCCGAAATATTCCTGTGTGTTAGAGATTCAGAATATTCTGAGGCAAGGCTTTGTAAAGGTTTGGCTGCTAAGTATATTAAAAGGTTTTGGCATGCTTTGTTAAAATCTAAGAGTTTTGGCGAGGATTGGATAAAGTTGCTTCTTTCAATAATTTGCCTTGAAGAATCTCAATTGCCTGTATTGTTTTCTAAATTACCGTTTAGGGATATTTTTGACTGTGAAGATACCAAGTCAAGAGATGACCAGTTTTCATCTGAACAGGTGTTTCTTCTGCAAATACTATCGGAAATTTTGAATGAGCGAATCGAAGATGTTACTATTTCAAAGGATGTTGCATTGTTTATTTATGGAATATTCAAGAAATCTATCGGGGTTCTTGAGCAAGCAGTTAGAGTCAAGTCTGGTCTTCCCAGTGGCATTACTGCAGTCGATGTTCTTGGCTACTCTCTTACTATGTTGAGGGACATCTGTGCTCATGACAGTATGCGAGGTGATGAAGAGGATGCAAACAATGTTGTCGATGTGTTATTGTCATATGGCCTCGTTGAGTTGTTTTTGATTCTGCTTGGGGACCTTGAACCTCCGTCAATAATCAGGAAAGGAATCAAACAATCTGATAATCAAGACGGTGCTAATTGTTCCTCGAAACCATGCCCTTACAAGGGCTTTAGGAGAGACATAGTTGCACTTATTGGCAATTGTGTGCATAGAAGAAAACATGTACAAGATGAAATCAGGAGTAGGAATGGAATTCTACTGCTATTGCAACAGTGTGTTACCGATGACGACAATCCTTACCTGAGAGAATGGGGCATATGGTGTGTTAGGAATGTATTGGAGGGCAATGAGGAAAATCAAAAGGTAGTTTCTGAGTTGGAGCTGAAGGGATCTGCTGATGTGCCCCAAATTTCTGCACTTGGTCTAAAGCTAGGCGTCCAAAGCTTATCAATGTCCCATGAAATAATAGCATGA 1356 0.4027 MDSSFSLYKNKGFPYKKYNIKLDATFDNDPLAWSRPLVRHHCGEFSMAAVKANMDMEDQSQVEVGTDALFVGVYDGHKGDTTAIYLRDHIFGEILRRIQQNIKHMDNRVVNYSDSETVLRAYSANYQRSEIFLCVRDSEYSEARLCKGLAAKYIKRFWHALLKSKSFGEDWIKLLLSIICLEESQLPVLFSKLPFRDIFDCEDTKSRDDQFSSEQVFLLQILSEILNERIEDVTISKDVALFIYGIFKKSIGVLEQAVRVKSGLPSGITAVDVLGYSLTMLRDICAHDSMRGDEEDANNVVDVLLSYGLVELFLILLGDLEPPSIIRKGIKQSDNQDGANCSSKPCPYKGFRRDIVALIGNCVHRRKHVQDEIRSRNGILLLLQQCVTDDDNPYLREWGIWCVRNVLEGNEENQKVVSELELKGSADVPQISALGLKLGVQSLSMSHEIIA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03504 451 Gene3D - 209 428 IPR011989 -
Trre14g03504 451 PANTHER ATAXIN-10 160 442 - -
Trre14g03504 451 Pfam Spinocerebellar ataxia type 10 protein domain 351 441 IPR019156 -
Trre14g03504 451 Gene3D - 32 185 IPR036457 -
Trre14g03504 451 SUPERFAMILY PP2C-like 35 173 IPR036457 -
Trre14g03504 451 SUPERFAMILY ARM repeat 272 419 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03504 Trre-Chr14 43582346 43587180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03504 31 96 PP2C-type Phosphatase Gene Family AT5G06750 54.545 6.96e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03504 K19323 - gmx:100795092 430.254