LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g03499	ATGTTTCCAGCCCCTGAGTCTCTTTTTGCACCGGAACTTATAGATGTTGAAGGTGTTGGAATGGCTGACATGGTGTTTCGCTGCATTCAAGAAATGGATATCGACAACCGGATGATGCTTTATCAACACATTGTTTTAAGTGGAGGGAGCACCATGTATCATGGATTACCAAGCCGATTGGAAAAAGAAATACTTGATCGTTATCTTGATGTTGTGTTGAAGGGCAATAAAGATGGACTGAAGAAATTACGATTAAGAATTGAGGATCCACCTCGTAGGAATAATGAAGCTATCTTTTCCAAGTTTTTTCTTGAAGGAATCACTTTTTTTGCATGTACTCAAGTTGAAATGCCACCTTTGATGGACATTGAGGTAAAACGTCTATGA	387	0.3902	MFPAPESLFAPELIDVEGVGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYHGLPSRLEKEILDRYLDVVLKGNKDGLKKLRLRIEDPPRRNNEAIFSKFFLEGITFFACTQVEMPPLMDIEVKRL	128

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g03499	128	Gene3D	-	19	96	-	-
	Trre14g03499	128	Gene3D	Actin; Chain A, domain 4	2	18	-	-
	Trre14g03499	128	PANTHER	ACTIN	2	82	IPR004000	-
	Trre14g03499	128	Pfam	Actin	2	67	IPR004000	-
	Trre14g03499	128	SUPERFAMILY	Actin-like ATPase domain	2	94	IPR043129	-

Showing 1 to 5 of 5 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g03499	Trre-Chr14	43501719	43505481	Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g03499	2	110	Cytoskeleton Gene Families	AT5G09810	32.110	6.30e-13	62.4

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g03499	K17260		-	cave:132183318	178.333

Showing 1 to 1 of 1 entries