Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03478 ATGTCAACTTTTGCACTTGGGAGGATTCTCACAATCAAGCTGAGTGCTTCTTCTGTCCAACACAATGCATCTTTTGCTCTTTATGCTCCTGCGGATAATGAGGACAATGTTGCAGTTATTATTAAGGGTGGTTGTTTTCAAAAACTGCAGCAGGGACATTTCAATGCTCAGCCCACTCAAGAGTGTGTAACAAAGACATTAAAAAGATTGGAAGAGAAGATGCAAGGGAGAGTACTGAAACACATGCTATATCTTATGCGCACTGGGGAAAAGGGTGTTCAAATACGTGTAGTTCTTGCTCTTGCACATTTATGTTCCCCTGATGATCAGACTTATGAATTGACCAACCATAATGGAATTACATTTCTTGCGGAACAGGTTAGTCATCATCCCCCAATGAGTGCTGGGCATGCTGAGAATGAACATTTTACACATGACGTGACTTCCAAGTTAAAAACTAAGTTTTTGGGGAATTCTGTTGATGTGTACCCTGTTGGAAGGACGCGTGTGACCCTTAAGAAGCACAGTGTAGTCTTAGATTTGGTGCCACCTCCTACAAAGGTTAATAACTTGATTTTTGGCCGGACTTGGATTGATTCACCTGGGGAAATGATAATGACAAATCCGACAACTGGAGACAAAGCCGTACTTTACTTTCAACAATGTGGATGGTTTGGCTGTTTAGTGGATGGTTATGTTTATAATTCTTCTGAAGAGCCCAACATTTTGATGACTGGGAAGTGGAATCAGTCAAAGAATTTTCAACCTTGTGATTCAGAAGGAGAGCCTCTTCCAAACACAGAATTGAAAGAGCACGCTGGAAATTTAATTGTGTGTTGGAACAATAAATTTCTCTGTAGTATAAAGCATACAGTTCACCATCTGTATTGGGACAGTTTTGGAGAAATTGGGACAGCTTTGTGGGGTTCTATATCTCAAGGAGCAGTGGAGAGAAGATCATGCGTGGCAAGAGTTATCCACGGACATAGCCACCAGAGGCGACTTGGCTGCAAATACCGCCTATCTGTAACAAATGCCATTGGATACCTTCTAGGTTTGCTTATTGGATTACTTATAGACTCGGGTGATGGTGTCACTCATGGTGTTCCAGTGGTTGATGTCCATTCATTCCCTCATCTGACGAAACAGATAAATGTAGCTGGTCGACATACAACTGCCTATCTTGTTAATTTGCTATCAAGATATACAGTGAATAGGACTGCTGATTTTAAGACTGGGCTTGAGACCACTATCTTTGTTAAGAATTATACTTTGGCAGTTCTTATCAAAATGACTTGCCTGAAGATAAAGGAACTTATAGATGTTGTAGGTGATGGAATGGCTGACATGGTGTTTCGCTGCATTCAAGAAATGGATATCGACAACCGGATGATGCTTTATCAACACATTGTTTTAAGTGGAGGGAGCACCATAAATACTGGATTGTTATCTTGA 1455 0.4089 MSTFALGRILTIKLSASSVQHNASFALYAPADNEDNVAVIIKGGCFQKLQQGHFNAQPTQECVTKTLKRLEEKMQGRVLKHMLYLMRTGEKGVQIRVVLALAHLCSPDDQTYELTNHNGITFLAEQVSHHPPMSAGHAENEHFTHDVTSKLKTKFLGNSVDVYPVGRTRVTLKKHSVVLDLVPPPTKVNNLIFGRTWIDSPGEMIMTNPTTGDKAVLYFQQCGWFGCLVDGYVYNSSEEPNILMTGKWNQSKNFQPCDSEGEPLPNTELKEHAGNLIVCWNNKFLCSIKHTVHHLYWDSFGEIGTALWGSISQGAVERRSCVARVIHGHSHQRRLGCKYRLSVTNAIGYLLGLLIGLLIDSGDGVTHGVPVVDVHSFPHLTKQINVAGRHTTAYLVNLLSRYTVNRTADFKTGLETTIFVKNYTLAVLIKMTCLKIKELIDVVGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTINTGLLS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03478 484 Pfam Oxysterol-binding protein 111 257 IPR000648 GO:0008289
Trre14g03478 484 Gene3D - 103 289 - -
Trre14g03478 484 FunFam oxysterol-binding protein-related protein 3C 109 277 - -
Trre14g03478 484 Gene3D - 445 482 - -
Trre14g03478 484 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 111 252 IPR000648 GO:0008289
Trre14g03478 484 ProSitePatterns Oxysterol-binding protein family signature. 125 136 IPR018494 -
Trre14g03478 484 Gene3D Actin; Chain A, domain 4 392 409 - -
Trre14g03478 484 SUPERFAMILY Actin-like ATPase domain 354 482 IPR043129 -
Trre14g03478 484 Gene3D - 354 391 - -
Trre14g03478 484 SUPERFAMILY ARM repeat 18 130 IPR016024 -
Trre14g03478 484 SUPERFAMILY Oxysterol-binding protein-like 111 284 IPR037239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03478 Trre-Chr14 43339276 43352941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03478 349 482 Cytoskeleton Gene Families AT3G18780 29.341 8.52e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03478 - - gmx:100808070 303.523