Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03473 ATGAGCAAGAAGAAAGAAATGGAGGATTTGGAAAAGAACAGTGGTGACTTTGTTTCGAAGGAAGAAATTAAAGTTTTGATTGAACCTCTTTCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAAATATCCTTCAATTGCACAAGAAATAGAAAGTTTTGCAAATGTTGATCGCACCCAACAAAAGCTTAATGTTCGTGACTTGGACTCAAAAACTTTGTATTCGGCATTGCAAGTTCATGGAGAAATTGAGGACGGGAATGTGATGCTTGATAGAGACACAGGAAAATCGGCTCAGAGTGCATTGAATGCACCAAGCAACTTCATTGATGGAGTAAGTAAGTTATCTGATGATGAGGGCCTAACCAAAGCAACCAGTAGTGCTGCTGATCTTTCGCAGAGAAATCTTTATATTGGAAACTTATCACGACAAGTAACAAGAGAAAGGCTGCTCAACTATTTTGAGGGGCATGGTGATATAGAGGAATGTGTACTTGTACATCAATATAACAAGGATTTAAATATATCAAGTCGATTTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTCTTGGGGGAAGAACTATAACTGTAAAATATGATTTGCACAATGTTGGAGGTGGTCAGCCGTCTGTTCCTGCAAGAGTTGCACTGAATGCTAATGCACCTACTTATCAAATGGAAGCCTTATCTATGACTCCAGAATATGTTGCACCGAATGCTAATGCACCTAATGCTGCACCTCCTTATCCATACCTCCAAACCGATGCACCACCTTTTCCATACCCCAAACAGGTGCACCATATGCCGCATCTCCTTATCCATACCCCCAAACTGATGCATCACATGCTGCACCACCACCTTATCCATACGCCCAAACAGGTGCACGATATGCCGCGTCTCCTTATCCATACCTCCGAACTACTGCACTATATGCTGCATCTCCTTATCCAACTCTTCTCACAGCACCTTCTACTCAGTATTATTATTATCCTCAGTATTATAATCATCCCAACCCATGAATGCACTATTTTACTTCTTTCTGTACTTTCAAGTTCAATTCTTATTAGCCCCAAATTCCAGTCCAATTATTTGGTTGCTATCCCTTTGTGTAGAATTTTGTACGTTCTTTTTAGATGTAATTCTAGGTCAGAATCCATTGTGACTAGGAAGTTTTCATATATTTCTTCTGAATATAATATTTTGTAA 1251 0.3989 MSKKKEMEDLEKNSGDFVSKEEIKVLIEPLSKPQLVDLLSQLGSKYPSIAQEIESFANVDRTQQKLNVRDLDSKTLYSALQVHGEIEDGNVMLDRDTGKSAQSALNAPSNFIDGVSKLSDDEGLTKATSSAADLSQRNLYIGNLSRQVTRERLLNYFEGHGDIEECVLVHQYNKDLNISSRFGFVTYKTAEAAKNAIKDLDQSTLGGRTITVKYDLHNVGGGQPSVPARVALNANAPTYQMEALSMTPEYVAPNANAPNAAPPYPYLQTDAPPFPYPKQVHHMPHLLIHTPKLMHHMLHHHLIHTPKQVHDMPRLLIHTSELLHYMLHLLIQLFSQHLLLSIIIILSIIIIPTHECTILLLSVLSSSILISPKFQSNYLVAIPLCRILYVLFRCNSRSESIVTRKFSYISSEYNIL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03473 416 SMART rrm1_1 138 213 IPR000504 GO:0003723
Trre14g03473 416 SUPERFAMILY RNA-binding domain, RBD 130 219 IPR035979 GO:0003676
Trre14g03473 416 Gene3D - 117 230 IPR012677 -
Trre14g03473 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 211 IPR000504 GO:0003723
Trre14g03473 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 217 IPR000504 GO:0003723
Trre14g03473 416 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 72 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03473 Trre-Chr14 43308254 43310161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03473 129 198 C2H2 Transcription Factor Family AT2G19380 37.143 2.34e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03473 K12741 - gmx:100802911 218.779