Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03472 ATGAGCAAGAAGAAAGAAATGGAGGATTTGGAAAAGAACAGTGGTGACTTTGTTTCGAAGGAAGAAATTAAAGTTTTGATTGAACCTCTTTCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAAATATCCTTCAATTGCACAAGAAATAGAAAGTTTTGCAAATGTTGATCGCACCCAACAAAAGCTTAATGCATTGCAAGTTCATGGAGAAATTGAGGACGGGAATGTGATGCTTGATAGAGACACAGGAAAATCGGCTCAGAGTGCATTGAATGCACCAAGCAACTTCATTGATGGAGTAAGTAAGTTATCTGATGATGAGGGCCTAACCAAAGCAACCAGTAGTGCTGCTGATCTTTCGCAGAGAAATCTTTATATTGGAAACTTATCACGACAAGTAACAAGAGAAAGGCTGCTCAACTATTTTGAGGGGCATGGTGATATAGAGGAATGTGTACTTGTACATCAATATAACAAGGATTTAAATATATCAAGTCGATTTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTCTTGGGGGAAGAACTATAACTGTAAAATATGATTTGCACAATGTTGGAGGTGGTCAGCCGTCTGTTCCTGCAAGAGTTGCACTGAATGCTAATGCACCTACTTATCAAATGGAAGCCTTATCTATGACTCCAGAATATGTTGCACCGAATGCTAATGCACCTAATGCTGCACCTCCTTATCCATACCTCCAAACCGATGCACCACCTTTTCCATACCCCAAACAGGTGCACCATATGCCGCATCTCCTTATCCATACCCCCAAACTGATGCATCACATGCTGCACCACCACCTTATCCATACGCCCAAACAGGTGCACGATATGCCGCGTCTCCTTATCCATACCTCCGAACTACTGCACTATATGCTGCATCTCCTTATCCAACTCTTCTCACAGCACCTTCTACTCAGTATTATTATTATCCTCAGTATTATAATCATCCCAACCCATGAATGCACTATTTTACTTCTTTCTGTACTTTCAAGTTCAATTCTTATTAGCCCCAAATTCCAGTCCAATTATTTGGTTGCTATCCCTTTGTGTAGAATTTTGTACGTTCTTTTTAGATGTAATTCTAGGTCAGAATCCATTGTGACTAGGAAGTTTTCATATATTTCTTCTGAATATAATATTTTGTAA 1218 0.399 MSKKKEMEDLEKNSGDFVSKEEIKVLIEPLSKPQLVDLLSQLGSKYPSIAQEIESFANVDRTQQKLNALQVHGEIEDGNVMLDRDTGKSAQSALNAPSNFIDGVSKLSDDEGLTKATSSAADLSQRNLYIGNLSRQVTRERLLNYFEGHGDIEECVLVHQYNKDLNISSRFGFVTYKTAEAAKNAIKDLDQSTLGGRTITVKYDLHNVGGGQPSVPARVALNANAPTYQMEALSMTPEYVAPNANAPNAAPPYPYLQTDAPPFPYPKQVHHMPHLLIHTPKLMHHMLHHHLIHTPKQVHDMPRLLIHTSELLHYMLHLLIQLFSQHLLLSIIIILSIIIIPTHECTILLLSVLSSSILISPKFQSNYLVAIPLCRILYVLFRCNSRSESIVTRKFSYISSEYNIL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03472 405 SMART rrm1_1 127 202 IPR000504 GO:0003723
Trre14g03472 405 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 64 247 - -
Trre14g03472 405 Gene3D - 106 219 IPR012677 -
Trre14g03472 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 206 IPR000504 GO:0003723
Trre14g03472 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 200 IPR000504 GO:0003723
Trre14g03472 405 SUPERFAMILY RNA-binding domain, RBD 119 208 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03472 Trre-Chr14 43308254 43310161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03472 118 187 C2H2 Transcription Factor Family AT2G19380 37.143 2.21e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03472 K12741 - gmx:100802911 205.682