Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03471 ATGATGGATTTGAAGAAGAAAAGAAAAATAGATGAGGCAGGAAACAGTACATTGGTTTCCAAGAAAAAACTCAGACTTCTCATGCAACCTCTTGCCAAACCTGTACTCATTGATCTTCTCTCTAAACTAGGTTCCAAAGATCCTACAATTGCAGAAGAAATAGAAACTATTGCATATGCTGATCCTGTCCATAGAAGGCTTTTTGTTCGTGACCTGTCCTTGAATACCACTTCACAAACTTTGTGTGATGCATTTAAAGAGTATGGAGAAATTGAGGATGGGAAGGTGATTGTTTATGAAGGCACTCAAAAATCACGTGGATTTGGATATATTCTTTACAAAGATGTGAAATCAGCTCAGAAAGCATTGCTTCAACCTAGCAAGTTAATCGATGGAAGAATGACTGTATGTATGTTAGCTAGTGATGAGGTCACAAGAAAAATTAGTGATACTACACTGAGAAAGCTTTTTATTGGAAACTTATCACAGCGAGTAACAAATGGAATGCTGTACAACTATTTTAAGGGGCATGGTGATATTGAGGAATGTTCAGTTGTATATCACAAGGATTCAAAAAAATCACGTGGATATGGCTTCCTTACATACAAGACAGTGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTCTTGAGGGGAAAAATATTATAGTAAAATACTATGCTGATTCCAACAAGGGTGGAGTTGGTCAGTCGTCTGTTCCTGCAAGAGTGCCTGCAGGATATGATGCACCTGCGCCTCCTTATCCATACCCCCAAACTGATGCACCTGCGCCACCTTATCCATACCCCCAATCTGATGCAGCATATGTTGCGCCTCCTTATCCATACCCTCAAATTGATGCACCATATGCTGCGCCTCCTTATCCATACCCCCAATCTGATGCACCATATGCTGCGCCTCCTTATCCATACCCCCAATCTGATGCACCATATGCTGAACCTCCTTATCCATACCCCCAAACGGCTGCACCATATGCTCCAACTCATTATCCAAGTTTTCTCCCTGGACCTTCTACTTATCAAACACATGGTTATGGTTATGGACAGGGTCCTTATCCTCAGCATTACTATCAAAACCAGTGA 1113 0.4133 MMDLKKKRKIDEAGNSTLVSKKKLRLLMQPLAKPVLIDLLSKLGSKDPTIAEEIETIAYADPVHRRLFVRDLSLNTTSQTLCDAFKEYGEIEDGKVIVYEGTQKSRGFGYILYKDVKSAQKALLQPSKLIDGRMTVCMLASDEVTRKISDTTLRKLFIGNLSQRVTNGMLYNYFKGHGDIEECSVVYHKDSKKSRGYGFLTYKTVEAAKNAIKDLDQSTLEGKNIIVKYYADSNKGGVGQSSVPARVPAGYDAPAPPYPYPQTDAPAPPYPYPQSDAAYVAPPYPYPQIDAPYAAPPYPYPQSDAPYAAPPYPYPQSDAPYAEPPYPYPQTAAPYAPTHYPSFLPGPSTYQTHGYGYGQGPYPQHYYQNQ 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03471 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 225 IPR000504 GO:0003723
Trre14g03471 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 124 IPR000504 GO:0003723
Trre14g03471 370 SUPERFAMILY RNA-binding domain, RBD 148 243 IPR035979 GO:0003676
Trre14g03471 370 Gene3D - 146 251 IPR012677 -
Trre14g03471 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 232 IPR000504 GO:0003723
Trre14g03471 370 SMART rrm1_1 66 138 IPR000504 GO:0003723
Trre14g03471 370 SMART rrm1_1 155 228 IPR000504 GO:0003723
Trre14g03471 370 SUPERFAMILY RNA-binding domain, RBD 64 147 IPR035979 GO:0003676
Trre14g03471 370 PANTHER GEO13361P1-RELATED 58 142 - -
Trre14g03471 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 142 IPR000504 GO:0003723
Trre14g03471 370 Gene3D - 58 145 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03471 Trre-Chr14 43299285 43301230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03471 150 213 C2H2 Transcription Factor Family AT2G19380 39.062 2.16e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03471 K12741 - gmx:100802911 267.7