Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03470 ATGAGTATGAAGAAAGAAATGATGGATTTGAAGAAGAAAAGAAAAATAGATGAGGCAGGAAACAGTACATTGGTTTCCAAGAAAAAACTCAGACTTCTCATGCAACCTCTTGCCAAACCTGTACTCATTGATCTTCTCTCTAAACTAGGTTCCAAAGATCCTACAATTGCAGAAGAAATAGAAACTATTGCATATGCTGATCCTGTCCATAGAAGGCTTTTTGTTCGTGACCTGTCCTTGAATACCACTTCACAAACTTTGTGTGATGCATTTAAAGAGTATGGAGAAATTGAGGATGGGAAGGTGATTGTTTATGAAGGCACTCAAAAATCACGTGGATTTGGATATATTCTTTACAAAGATGTGAAATCAGCTCAGAAAGCATTGCTTCAACCTAGCAAGTTAATCGATGGAAGAATGACTGTATGTATGTTAGCTAGTGATGAGGTCACAAGAAAAATTAGTGATACTACACTGAGAAAGCTTTTTATTGGAAACTTATCACAGCGAGTAACAAATGGAATGCTGTACAACTATTTTAAGGGGCATGGTGATATTGAGGAATGTTCAGTTGTATATCACAAGGATTCAAAAAAATCACGTGGATATGGCTTCCTTACATACAAGACAGTGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTCTTGAGGGGAAAAATATTATAGTAAAATACTATGCTGATTCCAACAAGGGTGGAGTTGGTCAGTCGTCTGTTCCTGCAAGAGTGCCTGCAGGATATGATGCACCTGCGCCTCCTTATCCATACCCCCAAACTGATGCACCTGCGCCACCTTATCCATACCCCCAATCTGATGCAGCATATGTTGCGCCTCCTTATCCATACCCTCAAATTGATGCACCATATGCTGCGCCTCCTTATCCATACCCCCAATCTGATGCACCATATGCTGCGCCTCCTTATCCATACCCCCAATCTGATGCACCATATGCTGAACCTCCTTATCCATACCCCCAAACGGCTGCACCATATGCTCCAACTCATTATCCAAGTTTTCTCCCTGGACCTTCTACTTATCAAACACATGGTTATGGTTATGGACAGGGTCCTTATCCTCAGCATTACTATCAAAACCAGTGA 1131 0.4111 MSMKKEMMDLKKKRKIDEAGNSTLVSKKKLRLLMQPLAKPVLIDLLSKLGSKDPTIAEEIETIAYADPVHRRLFVRDLSLNTTSQTLCDAFKEYGEIEDGKVIVYEGTQKSRGFGYILYKDVKSAQKALLQPSKLIDGRMTVCMLASDEVTRKISDTTLRKLFIGNLSQRVTNGMLYNYFKGHGDIEECSVVYHKDSKKSRGYGFLTYKTVEAAKNAIKDLDQSTLEGKNIIVKYYADSNKGGVGQSSVPARVPAGYDAPAPPYPYPQTDAPAPPYPYPQSDAAYVAPPYPYPQIDAPYAAPPYPYPQSDAPYAAPPYPYPQSDAPYAEPPYPYPQTAAPYAPTHYPSFLPGPSTYQTHGYGYGQGPYPQHYYQNQ 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03470 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 148 IPR000504 GO:0003723
Trre14g03470 376 Gene3D - 64 150 IPR012677 -
Trre14g03470 376 Gene3D - 151 257 IPR012677 -
Trre14g03470 376 SMART rrm1_1 72 144 IPR000504 GO:0003723
Trre14g03470 376 SMART rrm1_1 161 234 IPR000504 GO:0003723
Trre14g03470 376 SUPERFAMILY RNA-binding domain, RBD 154 249 IPR035979 GO:0003676
Trre14g03470 376 PANTHER GEO13361P1-RELATED 64 148 - -
Trre14g03470 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 231 IPR000504 GO:0003723
Trre14g03470 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 130 IPR000504 GO:0003723
Trre14g03470 376 SUPERFAMILY RNA-binding domain, RBD 70 153 IPR035979 GO:0003676
Trre14g03470 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 238 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03470 Trre-Chr14 43299285 43301248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03470 156 219 C2H2 Transcription Factor Family AT2G19380 39.062 2.15e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03470 K12741 - gmx:100802911 267.7