Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03469 ATGATCGACTTTAGAAAACTCAGATTAACATTCACATTTTTCAATTTCACCCTAAATCACACCAATCTTAAACCCTCACTAAACCCTAGATTTTATAGCACAAAAAATTCACTTCAGTTAGATGTAAAACCCAAACTTGGCTCAAAATCAACCATCAAAGAAGCTCAATCTGCATTGCTTGAATATCTTCATTCCACAAGAAGCTTGCAATTCTTGGACGCAGATAACATGTGCAAAAACTCACCTTTTTTCCTTCAAAATCTCGTCGAGAAATCCCTAAAAAACGAGAATACAATTAACGCAAAACGGTCAATTTCTCGCTACCTTCGTTATCATCCCATTAACGAATTCGAACCCTTTTTCGAGAGTTTAGGTTTGAAGCCTTCTGAATATACACATTTGCTTCCTCGTGGTTTGATTTTTCTCAATGATGATCCTCTTTTGATGGAGAATTATCATACTCTGTGTAATTATGGAGTTCCTCGATCCAAAATGGGGAAAATTTTCAAATTAGCGCCTCAAGTTTTAAGCTTTGAAAATGGGGTTTTGAGTTTGAAGCTTAAGGCTTATGAAAATTTGGGTGTTTCACCTTCCATTTTGATGAATGCTGTTGCTTTTCCGGTGAGGAACAGTTGGCTGAGATTATTCGTCGCAGTCCTTGCGTTATTTTTGAGGAATCAGGAGCTTTTGACTGAAATTGAGATGGAACCTGCAGAGATTGGAAAGATTTTCCAGTCTCACACATTATTTATTGGTTCCTCCACTCTCAAGACTACAAAGAGTTTGCTTGGCTGCTTGAATGTCGGCAAGAAACGTCTCTGTAGCATTGTGCAGGATAATCCTCTTGTAATGAAGAATTGGGTTTTAGGAAAGAGAGTTAAGCCTTTAGTTAGCTTAAGGGAGGCAGAAGAGGAGAAATCGAAGGCGGGGAAGATGGAGTTCTTGTTGCGCTTAGGATATGTGGAAAACACGAAACAAATGAATCGGGCATTTAAGATGTACAGAGGTAAGGGAGCTGAGCTTCAAGAAAGATTTGATTTTATTGTTAAAGCTGGCTTGACACGTGACCAAGTTCGTAGAATGATTAGAGTTTCCCCTCAGATTCTCAATCAGAACACAGACACAGTCAAGATGAAGATTGAGTATCTTGTAAAACAAGGATATTCTATATCAGATTTAGGTCAGTGGCCGCGATTTGGGTTGTGA 1206 0.3856 MIDFRKLRLTFTFFNFTLNHTNLKPSLNPRFYSTKNSLQLDVKPKLGSKSTIKEAQSALLEYLHSTRSLQFLDADNMCKNSPFFLQNLVEKSLKNENTINAKRSISRYLRYHPINEFEPFFESLGLKPSEYTHLLPRGLIFLNDDPLLMENYHTLCNYGVPRSKMGKIFKLAPQVLSFENGVLSLKLKAYENLGVSPSILMNAVAFPVRNSWLRLFVAVLALFLRNQELLTEIEMEPAEIGKIFQSHTLFIGSSTLKTTKSLLGCLNVGKKRLCSIVQDNPLVMKNWVLGKRVKPLVSLREAEEEKSKAGKMEFLLRLGYVENTKQMNRAFKMYRGKGAELQERFDFIVKAGLTRDQVRRMIRVSPQILNQNTDTVKMKIEYLVKQGYSISDLGQWPRFGL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03469 401 SMART mt_12 359 389 IPR003690 GO:0003690|GO:0006355
Trre14g03469 401 SMART mt_12 166 196 IPR003690 GO:0003690|GO:0006355
Trre14g03469 401 SMART mt_12 274 321 IPR003690 GO:0003690|GO:0006355
Trre14g03469 401 Pfam mTERF 336 399 IPR003690 GO:0003690|GO:0006355
Trre14g03469 401 Gene3D Transcription termination factor 3, mitochondrial 79 211 IPR038538 -
Trre14g03469 401 Gene3D Transcription termination factor 3, mitochondrial 222 399 IPR038538 -
Trre14g03469 401 PANTHER CGI-12 PROTEIN-RELATED 55 389 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03469 Trre-Chr14 43295591 43297466 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre14g03469 mTERF 4.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03469 - - tpra:123891547 360.147