Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03467 ATGGATTCAGGCAACTCTTCTTCAGAAGAGTCCTCTCTAAATGGCTTAAAATTTGGCCAAAGAATCTATTTTGAAGACATGTCTCTTCCAAATGCAAACTCCTCTGTTGCTTCTTCTTGTTCTTCTTCTGGTTCAAGTTCAAAGAAAGTAAAAAGTGGGTCAGTTCAACATTCTCAACCTCCTAGGTGTCAAGTTGAAGGTTGTAAACTAGATCTGACTCATTCTAAAGCTTACTATTCTAGACATAAAGTTTGTTCCATGCATTCTAAATCTCCTACTGTTACTGTTAATGGTCTTCAACAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTGCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGACGACTAGCTGGTCATAATGAGCGTCGTAGAAAGCTTCCACCCAACTCTCTCTTAACCTCACGTTTTGCCAGACTTTCTTCATCTGTTTTTGATAACAGTGGCCGAGGTGGCAGCTTCCTGATGGAATTTGATTCACACCAGAAACTTAGTCTGAAAAATGCACTTCCATCACATGGAAATCAAACCACAACACTTGGTTGGCCTTGGCCGGGTAACTCGGAGTCGGCCTCTGACAACCTTTTCCTGCAAGGTTCAATGGGCGGGACAAGCTTTGCTGGTGCGAGGCATCCTCCCGAGGAAAGTTACACTGGAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTTCTAGAAACACAGCAACAAGTCACGGATTGAACAACATGTTGAATTTCAATAATGGGACACCCATGACACAACTTGCTACATCATCTCATGGTGTAGCTATGCATCATCTCATTGATCAAAGTAACCTTTCTCATGAGACTGTTCCTGATCTTGGTCCAGGTCATATTTCGCAGCCCCTCGATAGCCAACTTCGTGGTGAGCTTGATCTGTCGCAGCAAGAAAGGAGGCATTATATGGATGTAGAACACTCGAGGGCCTATGAATCTTCTCAATGGTCACTGTAA 1026 0.4318 MDSGNSSSEESSLNGLKFGQRIYFEDMSLPNANSSVASSCSSSGSSSKKVKSGSVQHSQPPRCQVEGCKLDLTHSKAYYSRHKVCSMHSKSPTVTVNGLQQRFCQQCSRFHQLAEFDQGKRSCRRRLAGHNERRRKLPPNSLLTSRFARLSSSVFDNSGRGGSFLMEFDSHQKLSLKNALPSHGNQTTTLGWPWPGNSESASDNLFLQGSMGGTSFAGARHPPEESYTGVTDSSCALSLLSNQTWGSSRNTATSHGLNNMLNFNNGTPMTQLATSSHGVAMHHLIDQSNLSHETVPDLGPGHISQPLDSQLRGELDLSQQERRHYMDVEHSRAYESSQWSL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03467 341 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 14 288 IPR044817 GO:0003677
Trre14g03467 341 Pfam SBP domain 63 136 IPR004333 GO:0003677
Trre14g03467 341 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Trre14g03467 341 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Trre14g03467 341 MobiDBLite consensus disorder prediction 33 62 - -
Trre14g03467 341 FunFam Squamosa promoter-binding-like protein 14 54 124 - -
Trre14g03467 341 SUPERFAMILY SBT domain 61 142 IPR036893 GO:0003677|GO:0005634
Trre14g03467 341 MobiDBLite consensus disorder prediction 33 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03467 Trre-Chr14 43274125 43277059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03467 16 341 SBP-box Gene Family AT2G42200 41.711 2.03e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre14g03467 SBP 9.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03467 - - mtr:11430800 509.99