Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03462 ATGGCAGGGACTGCTATCTACACCTCCTGCAACTTAGGGAGATGTAGTAGGTTGGTATTAAAAACTCACAATGGAGGAAGGAGCATGCAGCCAGAGAAGCTAGTATCTCAATGTCAAATGAGAAGAAGAAACTTTACAATAAAAGCAGAAGTGAAATTTGTAACAGCTGATGATGCTAAGGAACTTGTAGCAGTAGATGGATATAATGTTCTTGATGTAAGGGACAAATCTCAGTTTGAACGAGCTCACATTAAAACATGTTACCATGTCCCTCTTTTTGTTGAAAATACTGACAATGATCCTGGTACAATCTTATTAAGGACTGTACACAATAATTTTTCTGGGTTGTTCTTTGGGATACCATTCACTAGGCCAAATCCTGATTTTGTACAATCTGTCAAGAGTCAGATACAGCCTGAAACTAAACTTTTGATTGTATGTCAGGAAGGATTAAGGTCGACCGCAGCAGCAAATAAGTTAGAGGAAGCTGGTTTCCAAAATGTAGCATGCATAACATCTGGACTTCAATCTGTGAAACCAGGAACATTTGAATCTGTTGGCAACACAGAGTTGCAGAATGCTGGCAAAGCTGGTTTGGTACAAATCCAAGGAAAAATTTCAGCGGTTTTAGGAACCGTTCTTATTTGTGCATATTTATTCATTACCTTTTTTCCTGATCAAGCTGAGAAGCTAATCCAATTAGTCCCTGCAGGCTAA 717 0.3891 MAGTAIYTSCNLGRCSRLVLKTHNGGRSMQPEKLVSQCQMRRRNFTIKAEVKFVTADDAKELVAVDGYNVLDVRDKSQFERAHIKTCYHVPLFVENTDNDPGTILLRTVHNNFSGLFFGIPFTRPNPDFVQSVKSQIQPETKLLIVCQEGLRSTAAANKLEEAGFQNVACITSGLQSVKPGTFESVGNTELQNAGKAGLVQIQGKISAVLGTVLICAYLFITFFPDQAEKLIQLVPAG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03462 238 SMART rhod_4 54 184 IPR001763 -
Trre14g03462 238 Pfam Rhodanese-like domain 55 178 IPR001763 -
Trre14g03462 238 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 48 176 IPR036873 -
Trre14g03462 238 FunFam Rhodanese-like domain-containing protein 9, chloroplastic 41 183 - -
Trre14g03462 238 CDD RHOD 58 179 - -
Trre14g03462 238 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 9, CHLOROPLASTIC 14 237 IPR044615 -
Trre14g03462 238 Gene3D - 37 184 IPR036873 -
Trre14g03462 238 ProSiteProfiles Rhodanese domain profile. 64 187 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03462 Trre-Chr14 43251518 43253265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03462 4 231 Sulfurtransferasese or Rhodanese AT2G42220 65.789 2.92e-110 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03462 - - adu:107492903 353.599