Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03460 ATGAGTGAGAAGAAAGAAATGGAGGATTTGGAAAAGAACAGTAATGGTGGTGAATTTGTTGTTTCTATGGAAGAAATTAGAGTTTTGAGTGAATCTCTTTCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAAATATCCTTCAATTGCACAAGAAATACAAAGTTTTGCAAATGCTGATCATGATTTGGACTCAAATACCAATTCAACAACTTTGTGTTCTAGAAATCTTTATGTTGAAAACTTATCACTACAAGTAACAAGTGAAATACTGTTCAACTATTTTGAGAGGCATGGTGATATAGAAGAATGTGTACTTGCACATCAACGTCAGGGTTCAAAAGTATCAAGATCTTGCTTCGTTACATACAAGACACTCGACGCTGCAAAGAATGCCATGGAACACCTAGATCAAACCACTCTCGAGGGAAAAACTATAACTATAAAATATGTTCCTTTAAGAGTAGCTCCAATGGCAGAATATGCTGATCCTATCCATAGAAAGCTTTTTGTTCGTGACTTGTCCTTGAATACCACTTCACAAACTTTGTGTGATGCATTTAAATTGTATGGAGAAATTGAGGATGGGAATGTGATTGTTTATCAAGACACTCAAAAATCGCGTCGATTTGGATATATCCTTTACAAAGATGTGAAATCAGCTCAGAAAGCATTGCGTGTACCTAGCAAGTTAATCGATGGAAGATCGACTCTATGTAAGTTAGCTCGTGATGAGGGCAAATGCAAAACTAGTGATACTTCGCTGAGAAAGCTTTATATTGGAAACTTATCACCAAAAGTAACTGATGGAATGCTGCACGACTATTTTTGGAGCCATGGTGATATTGAGGAATGTTCAGTTGTATATGACAAGGATTCATATGTATCACGTGGATACGGTTTCGTTACATACAAGACAGTAGAGGCAGCAAAGGAAGCCGTAAATGACCTACATCGCATGACTTTTGAGGGAAGAGATATAATTGTGAAATATGCTAATCCCCGCAAGGGTGGAGGTGGTCAGTTGTCTGTTCCTCCAATCAGTCCAACGGCAGCCTTACCCGTGCCTCCAGGATATACATACCCTCAAGCAACTGCACCATATGCTGCGTCTCATTATCCAAGTTTTCTCCGTGGATATCAAACACCTCCTCGGCATTACCATCAAAACCAATGA 1185 0.3907 MSEKKEMEDLEKNSNGGEFVVSMEEIRVLSESLSKPQLVDLLSQLGSKYPSIAQEIQSFANADHDLDSNTNSTTLCSRNLYVENLSLQVTSEILFNYFERHGDIEECVLAHQRQGSKVSRSCFVTYKTLDAAKNAMEHLDQTTLEGKTITIKYVPLRVAPMAEYADPIHRKLFVRDLSLNTTSQTLCDAFKLYGEIEDGNVIVYQDTQKSRRFGYILYKDVKSAQKALRVPSKLIDGRSTLCKLARDEGKCKTSDTSLRKLYIGNLSPKVTDGMLHDYFWSHGDIEECSVVYDKDSYVSRGYGFVTYKTVEAAKEAVNDLHRMTFEGRDIIVKYANPRKGGGGQLSVPPISPTAALPVPPGYTYPQATAPYAASHYPSFLRGYQTPPRHYHQNQ 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03460 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 337 IPR000504 GO:0003723
Trre14g03460 394 SMART rrm2_1 171 243 IPR003954 GO:0003676
Trre14g03460 394 SMART rrm2_1 260 333 IPR003954 GO:0003676
Trre14g03460 394 SMART rrm2_1 79 152 IPR003954 GO:0003676
Trre14g03460 394 SUPERFAMILY RNA-binding domain, RBD 77 154 IPR035979 GO:0003676
Trre14g03460 394 SMART rrm1_1 79 152 IPR000504 GO:0003723
Trre14g03460 394 SMART rrm1_1 171 243 IPR000504 GO:0003723
Trre14g03460 394 SMART rrm1_1 260 333 IPR000504 GO:0003723
Trre14g03460 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 247 IPR000504 GO:0003723
Trre14g03460 394 SUPERFAMILY RNA-binding domain, RBD 166 249 IPR035979 GO:0003676
Trre14g03460 394 SUPERFAMILY RNA-binding domain, RBD 255 343 IPR035979 GO:0003676
Trre14g03460 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 156 IPR000504 GO:0003723
Trre14g03460 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 330 IPR000504 GO:0003723
Trre14g03460 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 238 IPR000504 GO:0003723
Trre14g03460 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 150 IPR000504 GO:0003723
Trre14g03460 394 Gene3D - 53 162 IPR012677 -
Trre14g03460 394 Gene3D - 252 346 IPR012677 -
Trre14g03460 394 CDD RRM_SF 80 152 - -
Trre14g03460 394 Gene3D - 163 251 IPR012677 -
Trre14g03460 394 PANTHER GEO13361P1-RELATED 168 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03460 Trre-Chr14 43241874 43244358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03460 79 335 Eukaryotic Initiation Factors Gene Family AT2G23350 29.197 4.92e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03460 K12741 - gmx:100776344 213.772