Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03457 ATGAATCTCCAAACCAAAAACTTCCTATCTCTTTTGGTTCCAATAGCTGCAATTTTTGCATCATTGTATCTCATAAATCCAAATCCACAATTCCTAAACAATCTCACATATTTCTGTTTCACAACTTTGTCACCATCATCTATATACTTGTTCAAAGACCATCATCATAGACCACACAAAAAACACCCTGACACTGGAAATGATGGTTCTGTTTGTGATGATTTTCCACCAGGAATTCCACCTCCAAACACCAATACAACTTCTTATCTTTGTGTTGATCGAAAAGGGTGTTGTAATTTCACAACTGTTCAACAAGCTGTTAATGCTATTCCAGATTTCAGCTTAAAAAGAACCATAATATGGATTAACAGTGGCATCTACTATGAGAAAGTTATGGTTCCTAAAACCAAACCAAACATTACATTTCAAGGACAAAGCTATACTTCAACAGCAATTGCATGGAATGATACAGCAAAATCTGCTAATGGCACGTTTTATAGTGGCTCCGTACAAGTTTTTGCTTCCAATTTCATTGCTAAGAACATAAGTTTCATGAATTTAGCACCAATGCCAAGTCCTGGGGCTGAAGGTGCACAAGCAGTAGCAATGAGGATATCAGGAGATCAAGCTGAATTTAGGGGTTGTGGATTTTTTGGAGCACAAGATACCCTTCATGATGATAAGGGTCGTCATTACTTCAAAGATTGCTATATTCAAGGATCCATTGATTTCATATTTGGCAATGCAAGGTCACTTTATGAGAATTGTCAATTAGTTTCTATAGCAAATCCAGTACCACCAGGACAAAAGAACATAAACGGTGCAATTACAGCTCATGGTAGAGTTTCAATGGAAGAAAATACAGGATATGTGTTTATAAACAGTACAATAGGAGGCAATGGTAGAATTTGGTTAGGTCGAGCATGGAGACCCTATTCTCGTGTTATTTTTGCTTTCACAACTATGTCAGATATTATTGCCCCTGAAGGTTGGAATGATTTCAATGACCCTACAAGAGACCAGACTATATTTTATGGAGAGTACAATTGTTCTGGGCCAGGGGCTAGTGTGAATATGAGGGCCCCTTATGTACAAAGATTGAATGATACACAAGCTTTTCCATTTCTCAACACTACTTTTATTGATGGTGATCTATGGTTGGAAACTTAG 1170 0.3726 MNLQTKNFLSLLVPIAAIFASLYLINPNPQFLNNLTYFCFTTLSPSSIYLFKDHHHRPHKKHPDTGNDGSVCDDFPPGIPPPNTNTTSYLCVDRKGCCNFTTVQQAVNAIPDFSLKRTIIWINSGIYYEKVMVPKTKPNITFQGQSYTSTAIAWNDTAKSANGTFYSGSVQVFASNFIAKNISFMNLAPMPSPGAEGAQAVAMRISGDQAEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCQLVSIANPVPPGQKNINGAITAHGRVSMEENTGYVFINSTIGGNGRIWLGRAWRPYSRVIFAFTTMSDIIAPEGWNDFNDPTRDQTIFYGEYNCSGPGASVNMRAPYVQRLNDTQAFPFLNTTFIDGDLWLET 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03457 389 SUPERFAMILY Pectin lyase-like 89 387 IPR011050 -
Trre14g03457 389 Gene3D - 83 389 IPR012334 -
Trre14g03457 389 FunFam Pectinesterase 84 389 - -
Trre14g03457 389 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 78 388 - -
Trre14g03457 389 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Trre14g03457 389 Pfam Pectinesterase 92 384 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03457 Trre-Chr14 43211141 43214115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03457 17 388 Carbohydrate Esterase AT1G05310 64.171 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03457 - - gmx:100806629 678.707