Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03413 ATGGATTTGAATTCGCGTTATCAACATCAATTTCAACAAAACGAACCAAATTCGAGGTTGCTTCGTTTTCGCTCTGCGACTAGTTCAGATCATATTAGTACAAATTTCAAACAAGGTGGTGAAGGTTGTGGTGGCAGTGTCAATAATGAACCTGCAGAGAGGTTAGTTTTGAGATTCAACAATTCTGGTGAAACTTCATCGAGTAGCTTTCGACAATTCATGGATCATAATCCTTCTAATCATAGTAGTTCTAGTGCAAGTTCAAGCATGATGGTTGGTTCTTCTATGGGAATGGATCAAACTATTAGGACTACTTCCCCTGCTGGCCATTTCTCCAACAACATCATCTCCTTTCAAAATGGGTATGACACTATGAAAGGTGTTGAAAACTATGATGGGGTGAATGACAGTGATGGTGAACTTACTCTATCTATGAACATATTAAAAAATCAAATTGGCTTCTCACCAAAAAGTCATTCTTCCTTGGGAAGGTTATCACACAACTCGAAAACGGGGAGCGATGGCATTGGGACAACTCGCCGTGATGATGGAAGACAAGAAGATGGCAACGATGATGCTCAATATTATGGTCAAAAATTTGTTTATGATTCTAATGATCAGAATATAGAGGTAGGAAATCAAGTTGGTACACTATCACATCACTTGAGTTTGCCAAGAAAGTCATCGGAGATGTTTGTTGTGGAGAATTTACTTCAGTTCCCAGATTCTGTTCCAAGTAGTATCAGAGCTAAGAGAGGCTTTGCAACACATCCTAGAAGTGTCGCCGAAAGGATAAGAAGAACACGGATAAGTGAACGAATAAGAAAGTTGCAAGAGCTTGTTCCAAACATCGACAAGCAAACTTGCACATCAGACATGTTGGAATTGGCTGTAGAGTACATTAATGATCTTCAAAAAGAATTAAAGATTCTGACTGCAAAAAGAGCTAAATGCAGATGCAGAAATCAGAAATGA 975 0.3877 MDLNSRYQHQFQQNEPNSRLLRFRSATSSDHISTNFKQGGEGCGGSVNNEPAERLVLRFNNSGETSSSSFRQFMDHNPSNHSSSSASSSMMVGSSMGMDQTIRTTSPAGHFSNNIISFQNGYDTMKGVENYDGVNDSDGELTLSMNILKNQIGFSPKSHSSLGRLSHNSKTGSDGIGTTRRDDGRQEDGNDDAQYYGQKFVYDSNDQNIEVGNQVGTLSHHLSLPRKSSEMFVVENLLQFPDSVPSSIRAKRGFATHPRSVAERIRRTRISERIRKLQELVPNIDKQTCTSDMLELAVEYINDLQKELKILTAKRAKCRCRNQK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03413 324 Pfam Helix-loop-helix DNA-binding domain 260 305 IPR011598 GO:0046983
Trre14g03413 324 MobiDBLite consensus disorder prediction 156 175 - -
Trre14g03413 324 MobiDBLite consensus disorder prediction 156 192 - -
Trre14g03413 324 MobiDBLite consensus disorder prediction 176 192 - -
Trre14g03413 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 257 321 IPR036638 GO:0046983
Trre14g03413 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 304 IPR011598 GO:0046983
Trre14g03413 324 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 77 318 - -
Trre14g03413 324 SMART finulus 260 310 IPR011598 GO:0046983
Trre14g03413 324 CDD bHLH_AtbHLH_like 259 311 IPR045239 -
Trre14g03413 324 FunFam Transcription factor bHLH130 family 255 323 - -
Trre14g03413 324 Gene3D - 256 324 IPR036638 GO:0046983
Trre14g03413 324 Coils Coil 294 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03413 Trre-Chr14 42719337 42721537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03413 9 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 37.190 5.91e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g03413 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03413 - - tpra:123888389 557.755