Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03400 ATGGAACAACCTACTGGATCCATTCACGCACTCGATTCCGTTCAATTTAATGAAGAAATTCAAGGAATTATGGTTCCAGCACCGGCACCGGAAAACGCAAGCTCATTCACGGCACTACTTGAGCTTCCGCCGACGCAAGCTGTAGAGCTACTTCACTTACCTGATTGCGACAGAACCGACACCCGGAAACTATCTTGCTGCCACGTCAGCGTGAATCAGAAACCCTATCTTCCGAATTCTTCTAACGGTAATTTAACCTTTCCTACGAACGCCGCGTTAATTGAACGCGCCGCGAAATTCTCAGTTTTTGCCGGAGAGAATACTTCACCGGGAGAAGTGCGGTTGTTTCCGGCGGTGTCTGGATCGAATTTAGAAAGTGTGAAGAACGAACCACAAGAGACGGATTCGAATCCTTGTTCGACGCAAGAGTGCATTTCGGATCCAGCTGTTGAGAATAAGAATCAGAGAAACGTGAAGAGAAAAGAGCGGGAGAAAAAGGTTAAACCGTCGTCAAAGAAGAGCAAGAGCGTCGCAAATGAAACCTCCGGTGACGGTGAGAAGCTTCCCTACGTCCATGTTCGCGTTCGTCGGGGTCAAGCTACAGATAGCCATAGCTTAGCAGAACGAGCTAGGAGAGAGAAGATTAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCTGGAACAGCATTGGTTCTGGATGAAATCATCAACCATGTTCAAACTCTACAACGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAACTTAGACAGGTTATTGGCCTCTGATGGGTCATCTTTAATGGACAGTAGTTTACCTAGCATGGTTACGCCTCTCGTGTGGCCGGAAATCCCACTCAACAATAACAGACCGCATTATCAACAGCAATGGCAATTCGATGCATTCCATCAACCACTTTGGGGAAGGGAAGAAGACAACCATCATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCCTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1080 0.463 MEQPTGSIHALDSVQFNEEIQGIMVPAPAPENASSFTALLELPPTQAVELLHLPDCDRTDTRKLSCCHVSVNQKPYLPNSSNGNLTFPTNAALIERAAKFSVFAGENTSPGEVRLFPAVSGSNLESVKNEPQETDSNPCSTQECISDPAVENKNQRNVKRKEREKKVKPSSKKSKSVANETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQTLQRQVEILSMKLAAVNPRIDFNLDRLLASDGSSLMDSSLPSMVTPLVWPEIPLNNNRPHYQQQWQFDAFHQPLWGREEDNHHFMTPENSLLSYDSSANSASLHSNQLKMEL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03400 359 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 101 343 IPR024097 GO:0006355
Trre14g03400 359 Pfam Helix-loop-helix DNA-binding domain 203 250 IPR011598 GO:0046983
Trre14g03400 359 SMART finulus 205 255 IPR011598 GO:0046983
Trre14g03400 359 FunFam transcription factor bHLH48-like isoform X1 196 268 - -
Trre14g03400 359 MobiDBLite consensus disorder prediction 124 188 - -
Trre14g03400 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 268 IPR036638 GO:0046983
Trre14g03400 359 Gene3D - 196 269 IPR036638 GO:0046983
Trre14g03400 359 MobiDBLite consensus disorder prediction 124 152 - -
Trre14g03400 359 CDD bHLH_AtBPE_like 189 274 - -
Trre14g03400 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 249 IPR011598 GO:0046983
Trre14g03400 359 Coils Coil 239 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03400 Trre-Chr14 42578035 42583777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03400 10 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 53.639 4.58e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g03400 HLH 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03400 - - vun:114168708 546.199