Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03394 ATGTCTACATTTTGTATATACCTGTTCTTTCTTTCCTTAACCTTTTCAATCTTCAACCTCACTTCATCATCTTCATCAGAATTTCAAACCCTTCTTTCTTTCAAATCCACCATTCAAGACACCAAAAACACTTTATCAACTTGGTCAAACACTTCACAAACCCATTTATGTAACTGGACTGGTATCTCTTGTTCTTCATCATCACTCTCAGTAACCTCTGTTAACCTTCAAAGCTTAAACCTTTCTGGTGATATCTCTTCTTCCATTTGTGACCTTCCAAATCTCTTTGATCTTAATCTTGCTAATAATGTCTTCAACCAACCTATCCCTCTTCATCTTTCTCAATGTAGTTCATTGAAAAGTTTGAATCTTAGTAATAATCTTATTTGGGGTACTATCCCTTCTCAGATTTCACTTTTTGTTTCATTATCTGTGCTTGATTTGAGTAGAAATCATATAGAAGGTAATATTCCAGATAGTTTAGGTTCATTGAAGAATCTTCAAGTGCTTAATATGGGTAATAATTTGCTTTCTGGTGATGTACCTAAGGTGTTTGATAATTTGACTAAGTTAGAAGTTCTTGATTTGTCTGAAAATCCTTACTTGGTCAGTGAGATTCCTGAGGATATTGGTCAGCTTAGGAATCTAAAGCAACTTTTTTTGCAGAGTTCTTCTTTTCAAGGTGAAATTCCTGAGTCTTTGAAGGGTTTGATTAGTTTAAGTTATTTAGATCTCTCTATGAATAATCTAACTGGTGAGGTTCCTAAGACACTTGTGAGTTCTCTTAAGAATCTTGTTTCTTTTGATGTTTCACAAAACAAGCTTAAAGGGTCATTTCCAAATGGTTTGTGTAATGGAAAAGTGCTTATAAATTTAAGTCTTCACACAAATAGTTTCACTGGTTTAATACCAAACACAACTAGTGAGTGTAAGAGTCTTGAGAGATTTCAAGTTCAGAACAATGGTTTCTCTGGTGATTTTCCTGTTGTGTTATTTTCACTTCCTAAAATTAAGCTTATTAGAGGTGAAAACAATAGATTCACAGGACAAATACCTGAGTCAATCTCAGAAGCTGTTCAGTTAGAGCAAGTTCAGCTTGATAATAATCTTTTTGATGGTAAAATTCCTTCAGGTCTTGGTTTTGTTAAAAGCTTATATAGATTTTCTGCTTCTCTTAATCATTTCTATGGTGAAATTCCTCCTAATTTTTGTGACTCACCAGTTATGAGTATAGTGAATCTCTCTCACAATTCTCTTTCTGGTCATATACCTCAGCTGAAAAAATGCAGGAAACTAGTTTCACTTTCTTTAGCTGATAACAGTTTCACAGGAGAAATTCCTTCTTCTCTAGCTGAGTTACCTGTGCTTACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATTCCATTAGGGCTTCAAAACTTGAAGCTTGCTCTTTTCAATGTTTCCTTTAATCAGTTATCAGGTAAAGTACCATACTCTTTGATATCTGGTCTTCCTGCATCATTTTTGGAAGGTAATCCTTCTCTTTGTGGTCCCGGATTGCCGAATTCATGTTCTGATGACAAGCCAAGACACCGTTCTGCTTCTGGTCTTACAACCTTGACATGTGCTTTGATCTCTCTAGCATTTGTTGCTGGAACTGCTCTTGTTGCTGGTGGATTTATATTTTATAGGAGATCTTTTAAAGAGAGTGAAGTCGCCCTGTGGCGTTTGGTGTTTTTCTATCCTCTGAGAATTACTGAGCATGATCTTGTTATAGGGATGAATGAGAAAAGCTCAATAGGAAATGGAGTTTTTGGTAATGTTTATGTTGTGAGTTTGCCTAGTGGTGATTTAGTGTCTGTGAAGAAGTTAGTTAAATTTGGAAACCAGTCTTCAAAGAGTTTGAAAGTTGAGGTCAAAACTTTGGCTAAAATTAGGCATAAGAATATTGTTAAGATTCTTGGGTTTTGCCATTCTGATGAGTCAGTTTTTCTCATTTATGAATACTTGCATGGAGGAAGCTTAGGGGACTTGATTTCTAGTCAGAATTTTGAGTTGCATTGGGGAGTTAGATTAAAGATTGCTATTGGAGTTGCTCAAGGACTTGCATATCTTCACAAGGATTATGTACCACACTTGGTTCATAGAAATGTCAAGTCAAAGAACATTCTGTTGGATGTTAACTTTGAGCCAAAACTTACACATTTTGCTCTTGATAGGATTGTTGGAGAAGCTGCATTTCAATCAACTTTGGATTCTGAAGCTGCATCTTCTTGTTACATTGCTCCAGAATATGGTTACAACAAAAAAGCAAGTGAACAATTGGATGTGTACAGTTTTGGTGTTGTATTGCTAGAGCTAGTTTGTGGAAGACAAGCAGAGCAAACAGATTCAAGTGACTCTTCACTTGACATAGTGAAATGGGTTAGAAGGAAAGTGAACATTACTAATGGGGTGCACCAAGTTCTTGACACTAAAATATCACAAACTTGTCACCAAGAAATGGTTGGTGCTTTAGATATTGCTCTACGTTGCACTTCTGTGGTACCTGAAAAAAGGCCATCAATGTTAGATGTTATTAGAGGTCTTCAGTCTCTTGAGTCAAGGAACTGTGTTGCAAATTTGCAGGGTCCAAATGATGAACCCTCCATTCCTGTTTGA 2652 0.3597 MSTFCIYLFFLSLTFSIFNLTSSSSSEFQTLLSFKSTIQDTKNTLSTWSNTSQTHLCNWTGISCSSSSLSVTSVNLQSLNLSGDISSSICDLPNLFDLNLANNVFNQPIPLHLSQCSSLKSLNLSNNLIWGTIPSQISLFVSLSVLDLSRNHIEGNIPDSLGSLKNLQVLNMGNNLLSGDVPKVFDNLTKLEVLDLSENPYLVSEIPEDIGQLRNLKQLFLQSSSFQGEIPESLKGLISLSYLDLSMNNLTGEVPKTLVSSLKNLVSFDVSQNKLKGSFPNGLCNGKVLINLSLHTNSFTGLIPNTTSECKSLERFQVQNNGFSGDFPVVLFSLPKIKLIRGENNRFTGQIPESISEAVQLEQVQLDNNLFDGKIPSGLGFVKSLYRFSASLNHFYGEIPPNFCDSPVMSIVNLSHNSLSGHIPQLKKCRKLVSLSLADNSFTGEIPSSLAELPVLTYLDLSDNNLTGSIPLGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPSLCGPGLPNSCSDDKPRHRSASGLTTLTCALISLAFVAGTALVAGGFIFYRRSFKESEVALWRLVFFYPLRITEHDLVIGMNEKSSIGNGVFGNVYVVSLPSGDLVSVKKLVKFGNQSSKSLKVEVKTLAKIRHKNIVKILGFCHSDESVFLIYEYLHGGSLGDLISSQNFELHWGVRLKIAIGVAQGLAYLHKDYVPHLVHRNVKSKNILLDVNFEPKLTHFALDRIVGEAAFQSTLDSEAASSCYIAPEYGYNKKASEQLDVYSFGVVLLELVCGRQAEQTDSSDSSLDIVKWVRRKVNITNGVHQVLDTKISQTCHQEMVGALDIALRCTSVVPEKRPSMLDVIRGLQSLESRNCVANLQGPNDEPSIPV 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03394 883 SUPERFAMILY L domain-like 203 519 - -
Trre14g03394 883 FunFam Leucine-rich repeat family protein 26 182 - -
Trre14g03394 883 Pfam Protein kinase domain 592 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g03394 883 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 667 868 - -
Trre14g03394 883 ProSiteProfiles Protein kinase domain profile. 591 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g03394 883 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Trre14g03394 883 Gene3D Ribonuclease Inhibitor 203 259 IPR032675 -
Trre14g03394 883 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 582 666 - -
Trre14g03394 883 SMART LRR_typ_2 188 213 IPR003591 -
Trre14g03394 883 SMART LRR_typ_2 237 261 IPR003591 -
Trre14g03394 883 SMART LRR_typ_2 140 163 IPR003591 -
Trre14g03394 883 SMART LRR_typ_2 92 116 IPR003591 -
Trre14g03394 883 SMART LRR_typ_2 453 476 IPR003591 -
Trre14g03394 883 SMART LRR_typ_2 164 187 IPR003591 -
Trre14g03394 883 SMART LRR_typ_2 262 286 IPR003591 -
Trre14g03394 883 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 261 524 - -
Trre14g03394 883 Gene3D Phosphorylase Kinase; domain 1 585 666 - -
Trre14g03394 883 ProSiteProfiles Leucine-rich repeat profile. 455 478 IPR001611 GO:0005515
Trre14g03394 883 Pfam Leucine rich repeat 142 199 IPR001611 GO:0005515
Trre14g03394 883 SUPERFAMILY L domain-like 24 285 - -
Trre14g03394 883 Pfam Leucine Rich Repeat 456 477 IPR001611 GO:0005515
Trre14g03394 883 ProSitePatterns Protein kinases ATP-binding region signature. 597 620 IPR017441 GO:0005524
Trre14g03394 883 Gene3D Ribonuclease Inhibitor 24 202 IPR032675 -
Trre14g03394 883 Gene3D Ribonuclease Inhibitor 260 524 IPR032675 -
Trre14g03394 883 SUPERFAMILY Protein kinase-like (PK-like) 593 858 IPR011009 -
Trre14g03394 883 ProSiteProfiles Leucine-rich repeat profile. 118 140 IPR001611 GO:0005515
Trre14g03394 883 Gene3D Transferase(Phosphotransferase) domain 1 667 875 - -
Trre14g03394 883 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03394 Trre-Chr14 42482783 42485855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03394 27 863 Receptor kinase-like Gene Family AT5G06940 62.708 0.0 1025
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre14g03394 Pkinase 4.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03394 - - gmx:100794428 1379.77