LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g03390	ATGGAGATAGAGAACAGTGAGATGAAGTCAAAGAAGATGGAAGAGTATGAAGTTATAGAACAAATTGGTAGAGGAGCATTTGGTTCTGCTTTTCTTGTTCTTCATAAGTCTGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGTTTGGCCAAGCAGACAGAGAAGTTCAAAAGAACAGCACACCAAGAGATGAATCTGATTGCAAAACTGAATAACCCTTATATTGTGGATTACAAAGATGCTTGGGTGGAGAAGGAGGACCATGTATACATTATAACTGGCTATTGTGAAGGAGGTGACATGGCCGAGAGCATTAAGAAAGCTCGAGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTAACTCAATTGTTGATAGCCGTAGATTACTTGCACTCTAACCGTGTAATCCACAGGGATCTTAAGTGTTCCAACATATTCCTCACCAAGGACAACAGTATTCGGCTCGGTGATTTTGGTCTTGCAAAGCGACTTAATGGAGAAGACCTCACTTCCTCGGTCGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCGGACATACCATATGGTTATAAATCTGATATATGGTCTCTCGGTTGCTGCATGTTTGAGATTGCTGCACATCAATCAGCATTTCGTGCTCCGGACATGGCTGGTCTTATCAATAAAATAAACAGATCCTCCATTTCTCCACTTCCAATTGTTTATTCTCCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAAAATCCAGAACATAGGCCAACAGCTGCCGAATTGTTAAGACACCCACATTTACAACCTTATGTTATTCGCTGTCAGAACGCATCATCTAATGTTCTTCCAATATATCCTATAGTTAACTCAAAGGATAAAACAAAAAGATCTCCCAAATCTAGTGGCAGAGAAATGGGATTTGTAAATCGTTTGGAACGGGTTCATCCGATTGAGGGAAACGGTGATGTACAGCCAAGAAATCTTCGTAATAATTGCGAGGTAACAATCTCAACAAGCACCCAATACAACCTTGAGGCCAAGATGGAAGCTCTTACAAGCTACACAGTTGAATCTTCTAATAGTATTAGCGACTCAAAAGATGGTTCAACAACATCCGAATCAACTACTTGTAGTGTCTGCAAGGAGGACTATAAAAGTAGACCACCAAGGGAAATGGCTAACAATGGAATCAACTCGAAGAGCATACACGATTCTCTGCATGAAGAAGAACAAAGATTTGCTGCAGCGACCACCGAAGTTGAAGATACCTTCTCGAGGGAAGGTTTTGGTAATGCTGAAGCGCAGAGGGAACATGCCAAACTTGATGACCTCAGGAAATCGACTACTTCCAGTGCAGGCAGTAGCAGCACTGACAAAAGCAATTCAATTAACGATGAAAGTTCCTCGCTAATAATGCATCCTCTTAGGGTTGAACATGACAGTACCGAGTCCGGAGACTACTTGAAGAAAAATGAAAACCGTGATTCCTTTACAGAAGAAGGCTTGCATATAAACGGCTTGTCGTCAGAGAGTATTGATAATCATAATACTGATACACTCGGAGTTAAGGATGATAATGTAGCAAAACAAAGCACTATTTGCTCCACACAGAAAGATAATAATGTAACACCAAACGGCATTTCATTGAGTGTAGTTACTGCAACAGATGGTGACGGTGACGAAACAATCAAGGATGAGTTGGATAGTCCATGCCAGAAAAGAGCCGATGCATTGGAATCTCTGCTCGAGTTATGTGCTCAATTACTTAAACAAGATAAACTTGAAGAGCTTGCTGGTGTTCTAAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGTTGACAAAAAGCCTCATATCTGCTCAAAAGTTTAATCCTGAAAACTAG	1908	0.4088	MEIENSEMKSKKMEEYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVDYKDAWVEKEDHVYIITGYCEGGDMAESIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNSIRLGDFGLAKRLNGEDLTSSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQSAFRAPDMAGLINKINRSSISPLPIVYSPTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVIRCQNASSNVLPIYPIVNSKDKTKRSPKSSGREMGFVNRLERVHPIEGNGDVQPRNLRNNCEVTISTSTQYNLEAKMEALTSYTVESSNSISDSKDGSTTSESTTCSVCKEDYKSRPPREMANNGINSKSIHDSLHEEEQRFAAATTEVEDTFSREGFGNAEAQREHAKLDDLRKSTTSSAGSSSTDKSNSINDESSSLIMHPLRVEHDSTESGDYLKKNENRDSFTEEGLHINGLSSESIDNHNTDTLGVKDDNVAKQSTICSTQKDNNVTPNGISLSVVTATDGDGDETIKDELDSPCQKRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLTKSLISAQKFNPEN	635

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g03390	635	SMART	serkin_6	16	270	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g03390	635	MobiDBLite	consensus disorder prediction	360	384	-	-
	Trre14g03390	635	CDD	STKc_Nek	16	270	-	-
	Trre14g03390	635	MobiDBLite	consensus disorder prediction	431	492	-	-
	Trre14g03390	635	FunFam	serine/threonine-protein kinase Nek6 isoform X2	96	284	-	-
	Trre14g03390	635	Gene3D	Phosphorylase Kinase; domain 1	1	95	-	-
	Trre14g03390	635	SUPERFAMILY	Protein kinase-like (PK-like)	13	315	IPR011009	-
	Trre14g03390	635	Pfam	Protein kinase domain	16	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g03390	635	ProSiteProfiles	Protein kinase domain profile.	16	270	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g03390	635	FunFam	Serine/threonine-protein kinase Nek6	1	95	-	-
	Trre14g03390	635	MobiDBLite	consensus disorder prediction	434	448	-	-
	Trre14g03390	635	MobiDBLite	consensus disorder prediction	475	492	-	-
	Trre14g03390	635	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	137	149	IPR008271	GO:0004672\|GO:0006468
	Trre14g03390	635	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	13	513	-	-
	Trre14g03390	635	MobiDBLite	consensus disorder prediction	449	472	-	-
	Trre14g03390	635	MobiDBLite	consensus disorder prediction	360	401	-	-
	Trre14g03390	635	ProSitePatterns	Protein kinases ATP-binding region signature.	22	45	IPR017441	GO:0005524
	Trre14g03390	635	Gene3D	Transferase(Phosphotransferase) domain 1	96	284	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g03390	Trre-Chr14	42414761	42419177	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g03390	9	271	MAP Kinase Kinase Kinase	AT3G13530	33.585	2.83e-39	153

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Trre14g03390		Pkinase	2.9e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g03390	K08857		-	gmx:100793379	933.324