Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03389 ATGGCTGATAATTATAACCCTTACTCTAATCTTTTCTCTTCTTCATCATCATCAACTTTCTTCAATTTCAACCATCTTTTACCATCTTCAAACCCTTCAACACATCACAACCCTTTTCTTCACCACCATAACTTCATCAACAACCATCACTCCTTTTTTCACTACCACCATCTTTCATCTTCTTCTTCTTCACCACCTTCTCCTCCTCTCAGAGAAGAACTACCTCTTTTAAGCCTAATTCCAGCAAAACAAGAAGTAGAATATGAAGATCAACAAGAACATGAAGATATTATTCAAGATCAAGACCTTCCTTGCACTGCCATGGATTTAGAAGAAAGAGAAGAAAATGTTAATAATGGTACTTCTTCTTCTACCACTGTCACTGTTGCACTTCACATAGGTTTACCAAACCCTAGTGCTGCTGAAATGGCTTCTCTACTACTTTCTTCCTCTAACTCGTCTGATATCACTGCTGATAATAACAAAGAACATGGTGAGGATTCTTGTTCAGGTTTCATGATTAATAATAGACTTAACAAAGGACAATATTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTCCAAAACCTTCAACAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGTCCAGAATCTCTAAGAGGGACACAACCAACAGGAATGCTAAGACTACCTTGTTACTGTTGTGCACCAGGATGTAGAAACAACATTGATCATCCAAGAGCAAAACCATTGAAAGATTTTAGAACACTTCAAACACATTACAAGAGAAAACATGGAATTAAACCTTTCATGTGTAGAAAATGTAGCAAAGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGCAAGTTATGGTATTGTATCTGTGGTTCTGATTTCAAACATAAGAGATCTCTTAAAGATCATATTAAAGCTTTTGGAAATGGTCATGCTGCTTATGGATGTGATGGATTTGAAGAAGAAGATGAACCTGCTTCTGAAGTAGAGCAAGATAATGAATAA 1071 0.3707 MADNYNPYSNLFSSSSSSTFFNFNHLLPSSNPSTHHNPFLHHHNFINNHHSFFHYHHLSSSSSSPPSPPLREELPLLSLIPAKQEVEYEDQQEHEDIIQDQDLPCTAMDLEEREENVNNGTSSSTTVTVALHIGLPNPSAAEMASLLLSSSNSSDITADNNKEHGEDSCSGFMINNRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGCDGFEEEDEPASEVEQDNE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03389 356 FunFam zinc finger protein WIP2-like 197 220 - -
Trre14g03389 356 FunFam Zinc finger protein WIP2 251 333 - -
Trre14g03389 356 SUPERFAMILY beta-beta-alpha zinc fingers 194 220 IPR036236 -
Trre14g03389 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 225 IPR013087 -
Trre14g03389 356 SMART c2h2final6 282 302 IPR013087 -
Trre14g03389 356 SMART c2h2final6 198 220 IPR013087 -
Trre14g03389 356 Gene3D Classic Zinc Finger 197 220 - -
Trre14g03389 356 Pfam Zinc finger, C2H2 type 198 217 IPR013087 -
Trre14g03389 356 SUPERFAMILY beta-beta-alpha zinc fingers 264 302 IPR036236 -
Trre14g03389 356 PANTHER ZINC FINGER PROTEIN WIP2 35 354 IPR043584 GO:0003700|GO:0010468
Trre14g03389 356 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Trre14g03389 356 Gene3D Classic Zinc Finger 260 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03389 Trre-Chr14 42377817 42380164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03389 70 356 C2H2 Transcription Factor Family AT3G57670 68.571 8.20e-142 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g03389 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03389 - - zju:107403750 468.774