Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03380 ATGGAGAGAGGAGCGAGTAAGAAGAAAGCACCACCTCTCTCTTTGGAGCAATTCATCTCTATAACTACCCCTCTTCTCGACTTAGAAAAGGATGCTGAGATATCGAGCTCAATCGCTACTGGCGCGTCCAGGAATTTGGATACTGCTCAAAAGAGAGGATCAACAATCCTTAACTTGAAGTGTGTGGATGTTCAGACGGGGCTTATGGGAAAGTCTTTGATCGAGTTCCAATCCACAAAAGCAGATGTGCTTCCTGCACACAAGTTTGGCACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGACTTAGGTTCTCCTGCTCTTGGGCAAGGTGTAGTTTACAGATTAAAGGACTCATCAATTACTGTTGCTTTTGATGATATACCAGAAGATGGATTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCAAATGAGGTGACATATCGCAGAATGAAAGATGCATTAATTCAGCTGAGTAAAGGAGTGCATAAGGGTCCTGCTTCTGATCTAATTCCTGTCTTGTTTGGGGAGAGGCAACCAACAGTGTCCAAGAAGGATGTATCATTCACTTCCATTAATAGAAATCTTGATCACTCTCAGAAAGATGCAATTACAAAAGCCCTATCATCGAAGAATGTTTTCTTGCTACATGGACCTCCTGGAACGGGAAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTAAAACGTGGATCTAAGATTCTCGCTTGTGCTGCATCAAATATTGCTGTTGACAACATTGTCGAGCGACTAGTTCCACACAGAGTTAAGCTGGTGAGGATCGGTCATCCCGCACGTTTATTGCCTCAAGTGCTGGACAGTGCACTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTCGCAAATGACATTCGGAAAGAAATGAAGGTATTGAATGGAAAGCTGCTAAAAACCAAAGAGAAAAATACAAGGAGGGAGATACAGAAGGAACTTAGGACTCTATCTAGAGAAGAGCGGAAGAGGCAGCAGCTTGCTGTTACAGACGTAATTAAAACTGCAGATGTAGTATTAACTACTCTGATTGGGGCTTTCACTAAGAAACTTGACCGCACTTCATTTGATTTGGTGATTATCGACGAAGCTGCTCAAGCACTTGAGGTAGCATGCTGGATACCTCTGCTAAAGGGTACAAGATGTATACTTGCAGGAGATCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGGTTATGA 1260 0.4246 MERGASKKKAPPLSLEQFISITTPLLDLEKDAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKADVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPASDLIPVLFGERQPTVSKKDVSFTSINRNLDHSQKDAITKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRIGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKTKEKNTRREIQKELRTLSREERKRQQLAVTDVIKTADVVLTTLIGAFTKKLDRTSFDLVIIDEAAQALEVACWIPLLKGTRCILAGDHLQLPPTIQSVEAEKKGL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03380 419 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 13 419 - -
Trre14g03380 419 Gene3D - 23 419 IPR027417 -
Trre14g03380 419 Gene3D - 41 143 - -
Trre14g03380 419 SMART AAA_5 211 419 IPR003593 GO:0016887
Trre14g03380 419 Coils Coil 298 337 - -
Trre14g03380 419 FunFam DNA-binding protein SMUBP-2 41 143 - -
Trre14g03380 419 CDD DEXXQc_SMUBP2 196 419 - -
Trre14g03380 419 Pfam AAA domain 197 411 IPR041677 GO:0004386
Trre14g03380 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 408 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03380 Trre-Chr14 42313012 42317664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03380 170 380 Core DNA Replication Machinery Family AT1G08840 27.488 3.96e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03380 - K19036 gmx:100810545 742.265