Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03378 ATGATGGATACTTGCAAGAAATCTCCCTTGAAGCCATGGAAGAAAGGGCCAACCAGAGGGAAAGGTGGCCCTCAAAATGCTTCGTGTGAGTATCGAGGTGTTCGTCAAAGAACGTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACTAGACTCTGGCTTGGTTCTTTCGCAACTGCGGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGAAGACTCTATGGACCAGATGCGTATCTTAATCTTCCACACTTGCAACCACACTCGGTTTCGTCTATCAAAACTGGAAAGTTCAAGTGGTTGCCTTCGAAGAATTTTATTTCAATGTTTCCTTCTTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTACAAGAGTTTAAGCAGAATGCAGTTGCTGCGAGTCAATCATCACTTTCTAGTTCATCTAATGATCCAAAGTCAGAAGAAATTCAGAATGTAGAGAGCAACAAGAATCATGCAGAAAATCCTCCAAAGGAAAAAGATGTTCAAATGTCGGCGAATAAGATGTTTGGAGATTTTCAAGAGGAGAAACCACAGATAGACCTACATGAGTTTCTTCAACAGATGGGAATACTGAAAGAAGAAACACACTCGGAGCAAACTGAGAGTTCAGGAAGTTCAACAGTGCATGAAGCTGTGTCAAAAGATGATAATAATCAATTAGGAATATTTTCTGACACAAGTGTTAATTGGGAGGCATTGATCGAGATGCATGGAATTGCAGATATTCCGGAATTAGAAGCCACACAGCTCGAAGCATATGACCCGAGTGACGACCACCTTAATTTCTCAACTTCCATTTGGAACTTTTAA 870 0.4149 MMDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPHSVSSIKTGKFKWLPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQEFKQNAVAASQSSLSSSSNDPKSEEIQNVESNKNHAENPPKEKDVQMSANKMFGDFQEEKPQIDLHEFLQQMGILKEETHSEQTESSGSSTVHEAVSKDDNNQLGIFSDTSVNWEALIEMHGIADIPELEATQLEAYDPSDDHLNFSTSIWNF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03378 289 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Trre14g03378 289 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Trre14g03378 289 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Trre14g03378 289 MobiDBLite consensus disorder prediction 146 180 - -
Trre14g03378 289 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 251 - -
Trre14g03378 289 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Trre14g03378 289 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Trre14g03378 289 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Trre14g03378 289 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Trre14g03378 289 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Trre14g03378 289 MobiDBLite consensus disorder prediction 146 161 - -
Trre14g03378 289 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Trre14g03378 289 MobiDBLite consensus disorder prediction 1 28 - -
Trre14g03378 289 MobiDBLite consensus disorder prediction 162 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03378 Trre-Chr14 42310034 42310903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03378 6 289 AP2-EREBP Transcription Factor Family AT3G57600 51.389 9.35e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre14g03378 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03378 - - gmx:100801311 446.047