Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03345 ATGAATCACTTAACCGTTGGCACTGAAGATGCTTTTGCGAGCTTGCTTGAGCTTGCTGCTAATAATGATGTTGAAGGGTTCAAACGAATGATTGAGTATGATCCTACGTCGGTAGATGAGGTTGGATTATGGTATGGTCGTCGCAAGGGATCGAAGCAGATGGTCAATGAGGAAAGGACGCCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATGTTATGAAACTGATTATTTCTCTATCTGGTGTTGACATCAATAGGCCTTGTGGTCTTGACAAGAGCACTGCTCTTCACTGTGCTGCATCGGGTGGGGCTGAAAATGCTGTTGATGCTGTTAAGCTGCTTCTTGCAGCAGGGGCTGATCCTAATTCTGTGGATGCTAATGGGGATCGTCCGTTAGATGTTATTGTTTATCTCCCTAAGCTTGAATTTGTGAAAAACAGTCTTGAAGAGCTTCTTCAAACTGGTGATCCTAGTGCTGGTTGTAATCTTAGGGTGATTACAAACTCGTTTAATTCATATTCTCCTCCTTTGTCAGCTTCACCTGAGAACGGGTCTCCTTCTCCTCCACCAGATCTCCTGTTGAAGTTAAAGTCAATTGATGTCCCACTATCTCCTGCTGGATCCGAGAAGAAAGAATACCCTGTTGATCCATCCCTTCCTGATATCAAAAACAGCATATATTCAACTGATGAATTCCGGGAGAATGCCCGGAGAAGGGACCCAAGGAAGTTTCATTACAGCTGTGTCCCTTGTCCTGATTTTCGCAAGGGTGCTTGCCGGCGAGGGGATATGTGTGAATACGCTCATGGTGTTTTCGAGTGTTGGCTGCATCCTGCACAATATAGAACCCGTCTCTGCAAGGACGGGATAAACTGCTCCAGAAGAGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGACCGTTGTATGTTTCAACTGGTTCTGCTGTCCCCTCACCTCGGTCAAGCGCGTCGTCTGCTATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCGCCTTCTTCGATGTCTGTTATGTCTCCTTCACCATTCACTCCACCCATGTCCCCGTCCGGCAATGGCATTTCACACAACTCTGTTGCTTGGCCCCAACCAAACATCCCAGCATTGCATCTTCCAGGAAGTAATCTTCAGTCTAGTCGTTTGAGATCTTCGCTCAATGCTAGAGATATTCATATGGATGAATTTGAGATGTTATCTGATTATGATCAACAGCAACAGCTCCTTAATGAGTTGGCATGCCTCTCTCCACGTCATTTGAATTCTAACAGTCTTAGTCGCTCTGGTCGAATGAAGCCATTGAATCCATCAAATCTCGATGACCTCTTTTCTGCCGAGAGTTCTTCTCCCCGATATGCTGATCCAACACTGAATTCAGCTGTTTTTTCTCCAACTCACAAATCAGCTGTCTTTAATCAGTTTCAGCAGCAGCAGAACATGTTGTCACCAGTGAATACAAATTTCTCTCCTAAAAATGTTGATCATCATTTATTGCAGGCAGCTTCTTATGGTGTTCAGCCATCAGGAAGAATGTCTCCACGAAACGTGGAACCTATCTCTCCAATGAGCTCGAGGATGTCAATGCTCGCTCAACGCGATAAACAGCAACAGTTTCGCAGCCTAAGCTTCCGCGAGCATGGCTCTAACTCTATGCTTGCAGCTGCTGGCTCAGTCAATTCTTGGTCCAAATGGGAATCCCCCAACGGTAAGTTGGATTGGGCTCACAATGCAGATGAAGTAGGCAAGCTCCGCAGATCATCTTCATTTGAGCTTGGGAACAACGGCGAGGAGCCTGATTTATCATGGGTGCAGTCACTTGTGAAGGAATCTCCAACTGAGATTAAAGAGAAATTAGCAACTTCTATCTCAAGTGCTGCGCCAACTGGATCGGCTGGTGAGGGATTGAATATGAGCACACAAATGGAGTCCGTTGATCATGCTGTATTGGGAACATGGCTTGAACAGATGCAGCTCGATCATCTTGTGGCTCAGCAAAACTGA 2028 0.4606 MNHLTVGTEDAFASLLELAANNDVEGFKRMIEYDPTSVDEVGLWYGRRKGSKQMVNEERTPLMVAATYGSIDVMKLIISLSGVDINRPCGLDKSTALHCAASGGAENAVDAVKLLLAAGADPNSVDANGDRPLDVIVYLPKLEFVKNSLEELLQTGDPSAGCNLRVITNSFNSYSPPLSASPENGSPSPPPDLLLKLKSIDVPLSPAGSEKKEYPVDPSLPDIKNSIYSTDEFRENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSGNGISHNSVAWPQPNIPALHLPGSNLQSSRLRSSLNARDIHMDEFEMLSDYDQQQQLLNELACLSPRHLNSNSLSRSGRMKPLNPSNLDDLFSAESSSPRYADPTLNSAVFSPTHKSAVFNQFQQQQNMLSPVNTNFSPKNVDHHLLQAASYGVQPSGRMSPRNVEPISPMSSRMSMLAQRDKQQQFRSLSFREHGSNSMLAAAGSVNSWSKWESPNGKLDWAHNADEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATSISSAAPTGSAGEGLNMSTQMESVDHAVLGTWLEQMQLDHLVAQQN 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03345 675 SMART ANK_2a 57 87 IPR002110 GO:0005515
Trre14g03345 675 SMART ANK_2a 10 40 IPR002110 GO:0005515
Trre14g03345 675 SMART ANK_2a 92 124 IPR002110 GO:0005515
Trre14g03345 675 Gene3D - 1 181 IPR036770 -
Trre14g03345 675 ProSiteProfiles Zinc finger C3H1-type profile. 251 273 IPR000571 GO:0046872
Trre14g03345 675 SUPERFAMILY Ankyrin repeat 15 147 IPR036770 -
Trre14g03345 675 SMART c3hfinal6 246 272 IPR000571 GO:0046872
Trre14g03345 675 SMART c3hfinal6 281 304 IPR000571 GO:0046872
Trre14g03345 675 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Trre14g03345 675 Gene3D - 247 309 - -
Trre14g03345 675 FunFam Zinc finger CCCH domain-containing protein 247 309 - -
Trre14g03345 675 Pfam Ankyrin repeats (3 copies) 24 126 IPR002110 GO:0005515
Trre14g03345 675 PANTHER UNKEMPT FAMILY MEMBER 17 234 IPR045234 -
Trre14g03345 675 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 251 271 IPR000571 GO:0046872
Trre14g03345 675 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03345 Trre-Chr14 42082210 42084315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03345 9 668 C2H2 Transcription Factor Family AT5G12850 50.354 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre14g03345 Ank_2 9.9e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03345 - - ccaj:109796653 1053.51