Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03234 ATGGATCACAGAACCTACTCCACTCTCTTCAATCTCCAGTCTTTGGTGAACTTTGAACTTCCAGAACAAGATGATGATTTTGAATATTATGGGAATAGTAGTCAGGATGAGAGCAGAAACATCAGAGGTGGGGCAATTGATAATAATGGGAATGGGAATGTGTCGGGAAGGGATTTGAATTTGTTGAAGAAGAGAAGGTTGTCTCGAAACAGTGAAAACGAGGAAAAGGGTGGTTTTGACGGGACACGCATGATGGAGGAACGATACCGATCAATGCTTGGAGATCATATTAAGAAATATAAGAGGAGGTTTAAGGGTGCCTCGAGTAATCCTGGCTCAAATCAGGTTGTTGTTCCATTTGCTAAGAGTAATAATGGATTAAAAGCTCCCAAGCTAGGGAATGAGCGCAGGAGAGGATTACGTGATGAGGAGACTATATCTGAATGGATAAATAATTCCAATGCTCAGAAACCAGGGAACTTTCTCGATACAGATTTCATACAGCAACATCGAACTGATAGGGTTATGTATGAACCTGCATCAGTGTATATTGGGGATGGTATAGCTTATAAGATTCCTCCAATTTATGATAAGTTGGCAGCAACGGTGAACCTTCCAAGCCTCTCAGATATCCACATTGAGGATTTTTACCTAAAAGGTACATTAGATTTGGGATCCTTGGCTGAAATGATGGCATCTGATAAAAGGTCTGCGAATAGAAACCGTGCAGGCATGGGGGAAACTATATCCCAATACGAATCACTTCAAGCACGTCTAAAGGACACACCGGCTTCTAACTCAACTCACAAATTCAGTTTGAAAATATCTGATGCTGATTTGAATTCCTCCATTCCGGAGGGAGCAGCTGGAAGCATAAAGCGATATATTTTATCTGAGGGTGGTATATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGAGACACTTATGAGATCATTGAAAGAAGCTTACCCAAGAAACAAAAGATAACGAAAGACCCTGCATTAATAGAGAGAGAGGAAATGGAAAAATTGGGAAGGATTTGGGTAAATATTGTGAGAAGAGACATACCAAGACATCATAGGAATTTTACTACTTTTCATCGAAAGCAGCTCGTTGATGCCAAGAGGGCCTCAGAAAACTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCGCTTAAATGGACAAGAACTGCTAGCATACGCACCCGAAAACTAGCTAGAGACATGTTACTATTCTGGAAACGAATAGATAAGGAGATGTTAGAAGTGAGGAAAAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAGCAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGGCTAAATTTTCTTATACAACAGACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAATATCTTCAGAAGCTCTAACCATGGCGGATGAAAGTACAAATGATGAAAATGCACTAATCAACTCTCTAGCAGATGGTCCTACCGTGGAGGAAGATCCCGAAGAAGTTGAACTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTTTCTAAGCAGAAAATGTTAACAAGTGCCTTTGACACTGAATGCTTGAGGTTGCGCCAGGCTGGTGAATCTGATTCACTTCAACCAGAAGTTTCTGGAGCAAGTAATATTGACTTGAAGACCCCCTCCACCATGCCCGTGGCATCTACAGTTCGAACTCCTGAATTATTTAATGGGATTCTCAAAGATTATCAGCTAAAAGGTCTTCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTTGCCGACGAGATGGGACTTGGAAAGACCATTCAGGCTATGGTTTTTTTAGCTCATTTAGCCGAGGAGAAAAACATATGGGGACCTTTTTTGATTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTCGAGCGCTTCTGCCCTGAACTAAAAATACTTCCTTATTGGGGTGGGCTTTCAGAGCGGACAGTGCTTAGGAAAAGTATGAATCCAAAGGATCTCTATCGCAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTGTTGGTCGCTGATGAGAAGTATTTCCGGCGTGTGAAATGGCAGTATATGGTTTTAGATGAAGCTCAAGCAATTAAAAGTGCCAATAGTATAAGATGGAAGACACTCCTCAGCTTTAACTGTCGGAATCGCCTACTGCTGACTGGTACACCCGTTCAGAATAATATGGCTGAGTTATGGGCTCTTCTTCATTTCATTATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAATCGATTGCATTCAATTATAAAGCCTTTCATGCTGCGGCGTGTTAAAAAAGATGTAATTTCTGAGCTGACTAGCAAAACTGAAATTACCGTGCACTGCAAGTTAAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAATTGTTTGATAGTAATCGTGGACAGCTGAATGAGAAGAAAATCCTGAATTTAATGAACATTGTTATTCAACTGAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGAAGCACATACCTTTACTTTGGAGAGATTCCAAATTCCCTTCCTCCTCCTCCATTTGGGGAGTTAGAGGATGTATATTATTCTGGTGGCCACAACCCCATCTCATATGAGATACCAAAACTTGTGTATCAAGAAATTATGCGGAGTTCTGAAACTCTCGGCTCAGCTGTTGGTCATGGTATCTGCAGAGAATCTTTTCAGAAGTATTTTAATATTTTTAGACCAGAAAATGTTTATCAATCTGTCTTTTCAGAAGATATGCATGTTAAAAGTGGAACCTTTGGGTTTACTCATTTGATGGATTTATCTCCACAAGAGGTGACATTTCTTGTTACTGGTTCTTTTATGGAGAGACTATTATTTTCTATGATGAGGTGGGAACAAAAATTCATTAATGAAGTTGTAGAATTTCTTACGGATACCATAGATGATGATTTGGAATGTAGTTACCTTGAAAAAGGCAAAGTGAGAACTGTTGCACGTATGTTATTGGTGCCGTCGAGATCTGAGACTAAGTTTCTACAGAACAGATTGCCAACTGGACCCAGCCATGCTCCTTTTGAGGCCTTAGTTGTCCCACATCAGGAGAGGGTTTTATCAAATGCCAGGCTTCTTCACTCAGCTTACACATATATCCCACAAAGTAGAGCACCCCCAATTGGTGCTCACTGCTCTGATAGGAACTTCTACTATAAGATGATAGAGGAACTACATGATCCATGGGTTAAGAGGTTGTTAGTGGGGTTTGCACGGACATCTGATTGTAATGGGCCTAGAAAGCCATATGGTTCTCATCATTTAATTCAAGAGATTGACTCTGAGCAACCTGTTTGTAAACCTGCTCTTCAGTTAACTCACAGTATTTTTGGATCTTCTCCACCTATGCGAAATTTTGATCCAGCAAAATTGCTTACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGTTTACGAGCCGGAAATCATCGTGTTCTCTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGATCAACATCTATTCAGGACCGCAGAGACATGGTCAGAGACTTTCAGCATAGGGCTGATGTTTTCGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATTAACTTGACAGCTGCTGACACGGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAGAGATGTTACTGTCTACCGACTTATATGTAAAGAGACAGTCGAAGAGAAGATTCTTCTCAGAGCTAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGAGGTGATCTTTTAGCACCCGAGGATGTGGTATCTTTGCTTCTGGATGATGTCCAGTTGCAGCAGAAATTTCAAAATATAACTGTCCAGGTAAGGGATAAGCAAAAGAAAAAACAGCCTATGAAGGGTATTTTGGTAAATGAAGAAGGTGATGCATCTCTGGAAGATTTATCAAACTCTGTAGCCCTGGGTACAACAGATGATCTATCCTTGGACCCAGAGGGATCAAAGTCCAGTAATAAAAAGAGAAAAGCTACCTCAGATAAGAAAACTTTGAGGCCAAAGAATTCTCAGAAGACGAGTGAATTTGATGCCACGCTTATGGACAACGAATTGGATGATGTCCACTTAAATACTGATCCTGTAGTTCAGAAACCCAAGAGACCAAAGAGAATAAAGAAAAATGTGAATGAAATGTATGAAGATACCTTTCCTGGGACAGCTACCACAGTGGCCCCAGAGCAGACCCAATTTCAACCTCCACATGATGAAGGTTCCAAAATAGTATCCGGCCAAGACACCTAA 4569 0.4067 MDHRTYSTLFNLQSLVNFELPEQDDDFEYYGNSSQDESRNIRGGAIDNNGNGNVSGRDLNLLKKRRLSRNSENEEKGGFDGTRMMEERYRSMLGDHIKKYKRRFKGASSNPGSNQVVVPFAKSNNGLKAPKLGNERRRGLRDEETISEWINNSNAQKPGNFLDTDFIQQHRTDRVMYEPASVYIGDGIAYKIPPIYDKLAATVNLPSLSDIHIEDFYLKGTLDLGSLAEMMASDKRSANRNRAGMGETISQYESLQARLKDTPASNSTHKFSLKISDADLNSSIPEGAAGSIKRYILSEGGILQVYYVKVLEKGDTYEIIERSLPKKQKITKDPALIEREEMEKLGRIWVNIVRRDIPRHHRNFTTFHRKQLVDAKRASENCQREVKMKVSRSLKWTRTASIRTRKLARDMLLFWKRIDKEMLEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSISSEALTMADESTNDENALINSLADGPTVEEDPEEVELKKEALKAAQEAVSKQKMLTSAFDTECLRLRQAGESDSLQPEVSGASNIDLKTPSTMPVASTVRTPELFNGILKDYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLIVAPASVLNNWNEELERFCPELKILPYWGGLSERTVLRKSMNPKDLYRREAKFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSIIKPFMLRRVKKDVISELTSKTEITVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGELEDVYYSGGHNPISYEIPKLVYQEIMRSSETLGSAVGHGICRESFQKYFNIFRPENVYQSVFSEDMHVKSGTFGFTHLMDLSPQEVTFLVTGSFMERLLFSMMRWEQKFINEVVEFLTDTIDDDLECSYLEKGKVRTVARMLLVPSRSETKFLQNRLPTGPSHAPFEALVVPHQERVLSNARLLHSAYTYIPQSRAPPIGAHCSDRNFYYKMIEELHDPWVKRLLVGFARTSDCNGPRKPYGSHHLIQEIDSEQPVCKPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSTSIQDRRDMVRDFQHRADVFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFQNITVQVRDKQKKKQPMKGILVNEEGDASLEDLSNSVALGTTDDLSLDPEGSKSSNKKRKATSDKKTLRPKNSQKTSEFDATLMDNELDDVHLNTDPVVQKPKRPKRIKKNVNEMYEDTFPGTATTVAPEQTQFQPPHDEGSKIVSGQDT 1522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03234 1522 SMART ultradead3 577 772 IPR014001 -
Trre14g03234 1522 Gene3D - 577 818 IPR038718 -
Trre14g03234 1522 MobiDBLite consensus disorder prediction 1412 1450 - -
Trre14g03234 1522 SMART helicmild6 1225 1308 IPR001650 -
Trre14g03234 1522 Pfam Helicase conserved C-terminal domain 1199 1308 IPR001650 -
Trre14g03234 1522 FunFam DNA helicase INO80-like protein 1167 1418 - -
Trre14g03234 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 565 809 IPR027417 -
Trre14g03234 1522 Gene3D - 819 888 IPR027417 -
Trre14g03234 1522 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1199 1349 IPR001650 -
Trre14g03234 1522 MobiDBLite consensus disorder prediction 33 56 - -
Trre14g03234 1522 MobiDBLite consensus disorder prediction 1495 1522 - -
Trre14g03234 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 811 1376 IPR027417 -
Trre14g03234 1522 Gene3D - 1162 1408 IPR027417 -
Trre14g03234 1522 Pfam SNF2-related domain 596 883 IPR000330 GO:0005524|GO:0140658
Trre14g03234 1522 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 593 764 IPR014001 -
Trre14g03234 1522 MobiDBLite consensus disorder prediction 28 57 - -
Trre14g03234 1522 MobiDBLite consensus disorder prediction 1495 1511 - -
Trre14g03234 1522 Coils Coil 420 459 - -
Trre14g03234 1522 ProSiteProfiles DBINO domain profile. 348 473 IPR020838 GO:0003677
Trre14g03234 1522 PANTHER HELICASE SRCAP-RELATED 121 513 - -
Trre14g03234 1522 FunFam Putative DNA helicase INO80 553 831 - -
Trre14g03234 1522 CDD SF2_C_SNF 1187 1319 - -
Trre14g03234 1522 Pfam DNA-binding domain 343 471 IPR020838 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03234 Trre-Chr14 40591023 40602935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03234 602 891 RAD5 or RAD16-like Gene Family AT5G43530 29.091 3.09e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre14g03234 SNF2_N 2.8e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03234 K11665 - gmx:100780615 2492.23