Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03199 ATGGCGCCAAAAACAAAACACTCTTCAATCTTCATCGGTAACTGCCAAATTACCGTCGAAGCCACCAGTTTCACCTGCAATTCCACTTCCAACGACCTCTTAATCACTCTCCCTCGAAGCGGAAAGATCAAAATATCTGATGTTTCTGCCAACCATAAAAACGCTTCTGAGAAATTCACTTCTGAAGAAAGGGAACGCGAGTTTGTGCTTCTTAATCCTAAAGATGTTGATGATATTAGCAAATCATACATTCAGGAAGTACTACAGATGTATATGAAAGAGCTGCCTGGAATGAATTATGCTGCGAATACTGGAAAGCAGTCGAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGAACACTACTTCTGAAGTCCAATTTGACCGGAGATTTAGGAAAGGTTATTGCTGCAATTACTTATCAAATCATCCCTGCAGATACAGAATATGCAGAGATCCCACTTGCAGCTGTCAATGCAATCTATCAACGGAAGGGTATTGGTCATCTGTTGTTTCTAGAGCTACGGAAGAGACTTCAAAATGTTGGCATTCGCTCCATTTTCTGTTGGGGAGACAAAGAATCTGAAGGATTTTGGCTTAAACAGGGTTTTTCATCAATAGCACAGGTGGATACAAAAGGTAGAGCCCGCAAGTTACCTGTAAAAGCTGATATTCGCAAAGCATTATGCTTTCCTGGTGGTTCAACTCTTATGATTTTCCACCTAAGGAAGGAATTGTTTGATGACAATGCTAACTCTGGGAAGTGTATCCCCTCACAGCCTCATCAGAATTCCTTCACACCGGCAATTGTTGAAAATGAGGGGCCTGAATCTTCAGGGGAACTACTCATTAATTTGAAAACTTCCCGTAGAACAAGCACAAATCAAAGTAAACCTAAGGCTTTGGTAAAAGTTGGATCTTCACCAGGACATGGAAAACTCACTGGATTTGACAGTCAGAATCCTAAGAACTGCTGCAATGACACTGTTGCTTCTGCCAGAGAAAATGATGATAGGCAAGCAAATGGTGCAGATTGTTCCCAGGATGAAAATTATGCTAATGTAGCGAATTGTTCTCAATCTACAAAAGTTGCAAAGAGGGCCTGGGAAGCCTCTTCATCCTCGTTGAAATCAAAGAGAGTGAGGGGAAGCCAGATAGCTGACTGTCATTCAGATTCTAGCTGGGGTTTTGTCTCAGAGGCTGATAGGACCAATCCTTGTTCTTCGGAAGCCCCTCATTACAATACTGCAATTACAAAGAACTCAACAAAATGTATTGGAGACCATATGCATAAAACACAGCTTGCAAAGGTGATTGAAGACCTTGGTGGTACTATTGCCTCCGATGGAAGCACAACCACACATGTTGTCACAGGACAAGTGAGAAAAACTCTGAATTTCTGTACCGCCCTCTGTTCTGGTTGGTTAAAAGAAAGTTTTCGTGAAGGCAGATTTGTTGATGAATCACCTCACATTCTGAATGATAAGGATTATTTGTTGAAGTATAATTCGGATTTAAGAAGTGCAGTTTTCCGAGCAAAAGCTTGTCCCTGTGCTTTATTTAAGGGGTATAATATATGTATTGCAGCTAAAGTTCGAACTTCTGCAAAAACTCTGTCTGCTATTGTTAGGTCTGCTGGCGGTAATGTTATTAGTGGACTCCAAAAAGTAAATGAAGCATCAACAACAATCTTTGTGACTTGTGAAGAAGATATTGAAGAAGCAATTATGGCTTCAAAGAAAGGTATAAGGACTTTCAGCAGTGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTTGACTTGGAAGCCCCACAATGTGTAGAGTCCTTATGA 1839 0.4084 MAPKTKHSSIFIGNCQITVEATSFTCNSTSNDLLITLPRSGKIKISDVSANHKNASEKFTSEEREREFVLLNPKDVDDISKSYIQEVLQMYMKELPGMNYAANTGKQSKFLERCVTNGKYRTLLLKSNLTGDLGKVIAAITYQIIPADTEYAEIPLAAVNAIYQRKGIGHLLFLELRKRLQNVGIRSIFCWGDKESEGFWLKQGFSSIAQVDTKGRARKLPVKADIRKALCFPGGSTLMIFHLRKELFDDNANSGKCIPSQPHQNSFTPAIVENEGPESSGELLINLKTSRRTSTNQSKPKALVKVGSSPGHGKLTGFDSQNPKNCCNDTVASARENDDRQANGADCSQDENYANVANCSQSTKVAKRAWEASSSSLKSKRVRGSQIADCHSDSSWGFVSEADRTNPCSSEAPHYNTAITKNSTKCIGDHMHKTQLAKVIEDLGGTIASDGSTTTHVVTGQVRKTLNFCTALCSGWLKESFREGRFVDESPHILNDKDYLLKYNSDLRSAVFRAKACPCALFKGYNICIAAKVRTSAKTLSAIVRSAGGNVISGLQKVNEASTTIFVTCEEDIEEAIMASKKGIRTFSSEWFMNCVMRQELDLEAPQCVESL 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03199 612 CDD NAT_SF 134 191 - -
Trre14g03199 612 Pfam BRCA1 C Terminus (BRCT) domain 521 596 IPR001357 -
Trre14g03199 612 SUPERFAMILY BRCT domain 430 496 IPR036420 -
Trre14g03199 612 CDD BRCT_PAXIP1_rpt6_like 521 602 - -
Trre14g03199 612 Gene3D BRCT domain 416 515 IPR036420 -
Trre14g03199 612 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 70 237 - -
Trre14g03199 612 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 70 211 IPR016181 -
Trre14g03199 612 Gene3D BRCT domain 520 610 IPR036420 -
Trre14g03199 612 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 74 227 IPR000182 GO:0016747
Trre14g03199 612 Gene3D - 66 219 - -
Trre14g03199 612 ProSiteProfiles BRCT domain profile. 521 601 IPR001357 -
Trre14g03199 612 MobiDBLite consensus disorder prediction 291 319 - -
Trre14g03199 612 SMART BRCT_7 417 484 IPR001357 -
Trre14g03199 612 SMART BRCT_7 519 599 IPR001357 -
Trre14g03199 612 ProSiteProfiles BRCT domain profile. 433 494 IPR001357 -
Trre14g03199 612 Pfam Acetyltransferase (GNAT) family 128 205 IPR000182 GO:0016747
Trre14g03199 612 SUPERFAMILY BRCT domain 519 601 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03199 Trre-Chr14 40159769 40166375 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Trre14g03199 Acetyltransf_1 9.8e-06 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03199 - - psat:127126386 893.649