Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03173 ATGGTTGCATTTTGTTCTCCTCAATTCTCATACTCAAACATGGGATGGTTCTTAGAAGAGTTAGAGCCAATTTCCTTAATTAGTCATAAGCAAAAAAACTATGTATCATTAGAATACTCTTTACCGCATAATGAATTCACTTCACCAAATAAGCAACATGTTGAGAATATTGAAAAGTCACCATCCCCTAAACTTATGGTTAAGAAGCTTAATCACAATGCTAGTGAACGTGATCGCCGCAAGAAAGTCAATAGCTTAATTTCTTCACTTCGTTCACTTCTTCCTGGTGAAGATCAAACGAAAAAAATGAGCATTCCAGTAACAATTTCAAGAGTATTAAAATACATACCGGAATTACAAAAGCAAGTGGAAGGATTAATTAAGAAAAAAGAAGAGTTCCTATCAAGAATTTCTAGGCAAGAATATGTAATGAACAAAGAATCATCAGAAAGGAAAATTCCAATTTACAATTCTTCTTTTGTAGTTTCAACAAGTAGGCTTAATGATAGTGAGCTAGCTATTCATATTTCATCTTATGAAGCCAACAAGATTCCACTATCTGAGATCTTAATGTGTTTAGAAGATAATGGACTTTTTCTACTAAATTCTTCATCTTCCAAAACCTTTGGAGGGAGACTCTTCTATAACTTGCATTTTCAGGTGGAGAAAACTCAAAAATTAGAGTGTGATGTTCTAATTCAGAAGCTTTTGTCGATATGTGAAAAACAACGAAGTAGTCATCAATATTGA 750 0.3293 MVAFCSPQFSYSNMGWFLEELEPISLISHKQKNYVSLEYSLPHNEFTSPNKQHVENIEKSPSPKLMVKKLNHNASERDRRKKVNSLISSLRSLLPGEDQTKKMSIPVTISRVLKYIPELQKQVEGLIKKKEEFLSRISRQEYVMNKESSERKIPIYNSSFVVSTSRLNDSELAIHISSYEANKIPLSEILMCLEDNGLFLLNSSSSKTFGGRLFYNLHFQVEKTQKLECDVLIQKLLSICEKQRSSHQY 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03173 249 Pfam Helix-loop-helix DNA-binding domain 68 120 IPR011598 GO:0046983
Trre14g03173 249 SMART finulus 73 125 IPR011598 GO:0046983
Trre14g03173 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 138 IPR036638 GO:0046983
Trre14g03173 249 Gene3D - 61 150 IPR036638 GO:0046983
Trre14g03173 249 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 60 228 - -
Trre14g03173 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 119 IPR011598 GO:0046983
Trre14g03173 249 FunFam Transcription factor ORG2 63 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03173 Trre-Chr14 39551074 39553256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03173 13 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.277 3.00e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g03173 HLH 4.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03173 - - psat:127129084 363.229