Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03142 ATGGTCGTCAATAGATTCAAGAGGGAACAATGTGACCGAACAAAGCATGATTCTAGCTTCTCCCGCTGGAAGATTCTTATTGGTCCTTCTGATTGGGAAGACCATTCCAAAGGAAAGGAAGGATCTGCCAGATACAGGATTCACAACCTTCCTCAGAAATTGTGTCCGGGAGTGTACGAGCTTGGTGTTGCTGTGTCATATAATGGTTTGGGGCGAGAAATTTACAAGCTTACCACTGACCCTTGCCGCATAGTTGTGGTTTACCTTGGAAAAGCTGACAATGTGAGAGCAAGACTCCAGCGTTATGGAAGGACTGGAGCTCATTTGAGTAATAGCTGTTCATCGGATGATTCATCTCTTCAGACGGGAAGGTCATTGTTTCAGGAGATATTTTCGCAAGGTTTCCCAATTGTTTATAGATGGGCTCCTATGCAAAACGAGAGAGATGCCCTGAGAACAGAAGCTCAGCTGCTTAGTACATTTGATTATGCATGGAACACAATCGGTAATGGTACACGGCGGCCTGATGATATTCTTCAAATGCTCAACAAACTTGCTTCAGGCACTAGATCATTTTCAGATGTGACCAAATTGCTTCTTCCCTTCACTCAGAGGAAAGTAGGGATACCAATTAAATCAAGCAAACTGCCTTTGACAGATGACAAATTAGATGAAGCTGACAATGGTAGCTATAATATCCTATCCCGTGTGTTCAAATTCAACAGGTCGCGTCCTAGGATAGTTCAGGATACCACCACTAGTAGGGCCATTCATGAGAGTGCAAAAATTTGCGGAGTAATATTGGCTGACGGTTCTACTTGTCAGAGGCCACCGGTTGAAAAAAGAGTGAGGTGTGCTGAACACAAAGGAATGAGAATAAAGATGTCCACTGCCAAAGCAATCAGAGCACCCAAGTTGGAATTAGAAACTATTGTAGGTAATGCCTATAGGTACCGAAATGTTAGCCATGATGTAGAAGAACCTCCACAAAGAAAGGTTGCGAGTCATGTTCAGGAGAGTTTTACCAAAACCATTATATGTGGAATCATCTTGGATGATGGATCTACTTGTACAAGACAACCAGTTAAAGGAAGAAAAAGGTGCCATGAGCATAAAGGGAAGAGAATACGTGGAAATCAGAAATAA 1146 0.4267 MVVNRFKREQCDRTKHDSSFSRWKILIGPSDWEDHSKGKEGSARYRIHNLPQKLCPGVYELGVAVSYNGLGREIYKLTTDPCRIVVVYLGKADNVRARLQRYGRTGAHLSNSCSSDDSSLQTGRSLFQEIFSQGFPIVYRWAPMQNERDALRTEAQLLSTFDYAWNTIGNGTRRPDDILQMLNKLASGTRSFSDVTKLLLPFTQRKVGIPIKSSKLPLTDDKLDEADNGSYNILSRVFKFNRSRPRIVQDTTTSRAIHESAKICGVILADGSTCQRPPVEKRVRCAEHKGMRIKMSTAKAIRAPKLELETIVGNAYRYRNVSHDVEEPPQRKVASHVQESFTKTIICGIILDDGSTCTRQPVKGRKRCHEHKGKRIRGNQK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03142 381 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 329 379 IPR038909 GO:0003677|GO:0006355
Trre14g03142 381 SMART uri_9 74 171 IPR000305 -
Trre14g03142 381 Pfam GIY-YIG domain-containing protein 20 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03142 Trre-Chr14 38821651 38824430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03142 1 376 HRT Transcription Factor Family AT5G56780 42.487 4.64e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Trre14g03142 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03142 - - lang:109350609 468.388