Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03079 ATGCTTCATCAACAACAACAGATTCAGAATAATATTGGAATGGAAAATAACTCAGAACTCTTTCAATTTATTGTTGCTAACAACCCTTCATTCTTTGACTATTCAACTCCTACTAATACTATGATGCAACAAAGTTTCTGTAGTTCCTCTGATAACAATAACTATTACCACCCCTTTGAAGCTTCTGAAATTACTGATACACCCTCCCAACAAGATAGAGCTTTAGCTGCTATGAAGAATCATAAGGAAGCTGAAAAGAGAAGGAGAGAGAGAATTAATTCTCACCTTGATCATCTTCGCACTCTTCTCCCTTGCAACTCCAAGACAGATAAGGCTTCGCTTCTTGCAAAAGTTGTCGAGCGAGTGAAAGAATTAAAGCAACAAACATCTGAAATCACAGAAATCGAAACAGTTCCATCTGAAACCGATGAAATAACCGTGATCTCAGCTGGTGGAGACATCACCGGAGAAGGCAGACTCATATTCAAAGCTTCATTATGTTGCGAGGATCGTTCTGACCTAATCCCAGATCTAATCGAAATCCTCAAATCTCTTCGCCTCAAGACAATCAAAGCTGAAATTTCTACGCTCGGGGGAAGAACGCGGAATGTTCTTGTTGTTGCAGCTGATAAAGAACATAATAGCATTGAATCAATTCATTTTCTTCAGAATTCGCTTAGGTCTTTGTTGGATAGATCTAGTAATTGTAATGATAGGTCAAAACGGCGTCGTGGGTTGGATCGAAGAATGATGCCTTAG 759 0.3913 MLHQQQQIQNNIGMENNSELFQFIVANNPSFFDYSTPTNTMMQQSFCSSSDNNNYYHPFEASEITDTPSQQDRALAAMKNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVERVKELKQQTSEITEIETVPSETDEITVISAGGDITGEGRLIFKASLCCEDRSDLIPDLIEILKSLRLKTIKAEISTLGGRTRNVLVVAADKEHNSIESIHFLQNSLRSLLDRSSNCNDRSKRRRGLDRRMMP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03079 252 SMART finulus 82 131 IPR011598 GO:0046983
Trre14g03079 252 Gene3D - 71 136 IPR036638 GO:0046983
Trre14g03079 252 FunFam transcription factor bHLH30 71 134 - -
Trre14g03079 252 MobiDBLite consensus disorder prediction 234 252 - -
Trre14g03079 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 133 IPR036638 GO:0046983
Trre14g03079 252 Pfam Helix-loop-helix DNA-binding domain 80 125 IPR011598 GO:0046983
Trre14g03079 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 125 IPR011598 GO:0046983
Trre14g03079 252 PANTHER TRANSCRIPTION FACTOR BHLH30 43 245 IPR045847 GO:0003700|GO:0006355
Trre14g03079 252 MobiDBLite consensus disorder prediction 233 252 - -
Trre14g03079 252 CDD bHLH_AtAIG1_like 71 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03079 Trre-Chr14 37756355 37757718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03079 20 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 60.092 2.05e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g03079 HLH 6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03079 - - gmx:100802566 307.375