Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03065 ATGGTGGAAAGAAGGAGAAAGCCTCTAATTCTGTGTTCAACCAAAAATATCATCAATTCCATATTGAAGAAGTCTTCAACGAATGAATTCCCTGAATTGCATTTACCGGTTGGAATTCTCCGATTTTCCAACAAATTGCCTTCTTTTGATCACTCTGCACTCATTGCTCTCTCCACTTCTCTTCTCAAAAGACTTTCCATCACTTCTGGTTCTCCGGTTATGGTCAAGAATGCTGAAATGAACACTCAGAGAATTGCAGTGGCTATTGCTCTGGACCCTCCTGGCAGTGACACCACTACCCTTGATATAAATCATTCACCATCCTCTTCTTCTAGAATAATGCTTGTTTTTCCTTCATGTGATTTCCCTCTAAGCGGTCCCTTGTTAAATGGTGAAATTGCTTATTTGTCTCCTCTTTTGGCCTTTAATCTTAACTTGCACATTTCATGTTTGAAATCTATTATTCACAATGGTCAAGATGCTTTGTCGTCTTATTTCAAACCTCAATGCCAAGTGGGTGATGAAGATGCGGCTAAAAGCATTGAAGATTCTGTCATTAATATAGAGTTGGAGCCTCTCGCTGAACCTCCCAGATTTGCCTCCCTTTTGAGGGTTGCTTTTGTGAAGATACCAGAATGTGGCGTCCTTGATTCCATTAAATCAACTTCAGATGTTGAATCCAAAGAACGTCAAGACATGATTGACTTGGCTTTGCAGAAGTACTTTGAAGTCGATAGATATTTGTCAAGTAGAGATATTTTCGGAATTGACATTAGTTGGAATTGTAATTCTACTATTTGCATTCCTTGTAACCACAAAACACAAAAGAAAAGCGACAACTTTATTTGTTTTAAGGTCATTGCTATGGAACCATCAAATGAACCAGTTCTTCGTGTCAATAAAACCTTAACTGCTTTGGTGTTAGTAGGGAGTTTCCCATCTGCCCTTCCTCCGGATTTGCTAATTGCTGGACCAGAAGGGACTGTGCCTTTGCAAAGGGACACAGTGAAGATCTTGGCTTCAATACTAGCACCAACTTTATGTCCAACTGCACTTTCTTCCAAGTTTAGAGTTTCAGTGTTATTGTATGGCTTGGCAGGTTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTCGACGACTAGGTCTGCATGTGGTGGAATATAACTGTCATGATCTAATGGGCTCCGAGAGAACATCTGTTGCTCTCACTCAAGTTTTCAAGACTGCTCAAAGATACTCGCCAACAATACTTCTTCTTCGTCATTTTGAGGTTTTCCAAGATTCGCAATCAGCTGAGGTTTCACAAAATGATCAAAGAGGCAATACATCTGAAGTTGCATCAGTCATTAGGAAATTGACTGAGCCAGTTGGCGAACATGGTGATAGTAACTCTTTGGTGAAATCAAACGGCGAATTTGTGGAGAAGACTTCTGAAAAGACAAGTGGGCACCAGGTCCTGTTGATTGCGGCTGCTGACAGTTCAGAGGGTCTACCTTCATCTATCAGACGCTGCTTTAGCCATGAAATAAACATGGGGCCTTTAACAGAAGAGCAAAGGGCTGAAATGCTATTGCATTCACTTCAAAATGTTTATGGACTCCACTCTAATACTGATCTAGAGGGTTTTGTAAAAGAAATAGTTGGACAGACATCTGGTTTCATGCCCAGGGATATGTGTGCTTTAATTGCAGATGCTGGTGCCAGCTTATTTCCCAGGAGCAATGCCGAAGTAGACAAAGATGAACCTGAAGATGCAGATAGTTCTCTTATTTCCAAGGTAACAGAGGACAACAACCAGTCAAAAGTTTCAGCTCTGAAACCTGAGAAAGAAGACTTGGTGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCAAATGTAAAATGGGAAGATGTTGGTGGGCTCGAAGATGTCAAAAAATCAATCCTGGATACTGTTCAGTTACCCCTCTTACATAAAGATCTATTTGCATCCGGATTACGCAAGCGATCTGGTGTTCTTTTGTATGGCCCCCCTGGAACTGGCAAAACTTTATTAGCAAAAGCTGTTGCTACCGAATGCTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATAGGAGAATCTGAAAAGAATGCCAGATCAGCACGTCCATGTGTCATATTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGGGGAGCTTCCGGAGATTCTGGAGGTGTTATGGACAGAGTTGTTTCACAGATTCTTGCAGAAATTGATGGCTTAAGTGATTCAACACAGGATCTATTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGATCCGGCACTTCTTCGCCCTGGTCGTTTTGATAAATTGTTATATGTTGGAGTTAACTCCGATGCATCATACAGAGAGAGGGTATTGAAAGCTCTAACGAGAAAGTTCAAATTGCATGAAGATGTTTCACTTTACGCCATTGCAAAAAAGTGTCCACCAAACTTCACCGGCGCAGACATGTATGCCTTGTGCGCAGATGCTTGGTTCCTCGCGGCAAAGCGCAGGGTTTTGAATGCAGATCCAGAGTCCTCCAACCCAGATAATGAAGCAGATTCTATTGTTGTTGAATATGACGATTTTGTCCAGGTCTTAGAAGAGCTTCAGCCTTCCCTCTCCACGGCTGAGCTTAAGAAGTACGAGCTTCTTAGAGATCAGTTTGAAGGCACCTCTAAATGA 2745 0.4146 MVERRRKPLILCSTKNIINSILKKSSTNEFPELHLPVGILRFSNKLPSFDHSALIALSTSLLKRLSITSGSPVMVKNAEMNTQRIAVAIALDPPGSDTTTLDINHSPSSSSRIMLVFPSCDFPLSGPLLNGEIAYLSPLLAFNLNLHISCLKSIIHNGQDALSSYFKPQCQVGDEDAAKSIEDSVINIELEPLAEPPRFASLLRVAFVKIPECGVLDSIKSTSDVESKERQDMIDLALQKYFEVDRYLSSRDIFGIDISWNCNSTICIPCNHKTQKKSDNFICFKVIAMEPSNEPVLRVNKTLTALVLVGSFPSALPPDLLIAGPEGTVPLQRDTVKILASILAPTLCPTALSSKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLMGSERTSVALTQVFKTAQRYSPTILLLRHFEVFQDSQSAEVSQNDQRGNTSEVASVIRKLTEPVGEHGDSNSLVKSNGEFVEKTSEKTSGHQVLLIAAADSSEGLPSSIRRCFSHEINMGPLTEEQRAEMLLHSLQNVYGLHSNTDLEGFVKEIVGQTSGFMPRDMCALIADAGASLFPRSNAEVDKDEPEDADSSLISKVTEDNNQSKVSALKPEKEDLVNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQILAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYAIAKKCPPNFTGADMYALCADAWFLAAKRRVLNADPESSNPDNEADSIVVEYDDFVQVLEELQPSLSTAELKKYELLRDQFEGTSK 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03065 914 FunFam Peroxisomal biogenesis factor 6 633 815 - -
Trre14g03065 914 Gene3D - 633 903 IPR027417 -
Trre14g03065 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 908 IPR027417 -
Trre14g03065 914 PANTHER AAA-FAMILY ATPASE 48 911 - -
Trre14g03065 914 SMART AAA_5 671 804 IPR003593 GO:0016887
Trre14g03065 914 SMART AAA_5 356 516 IPR003593 GO:0016887
Trre14g03065 914 Gene3D - 802 888 - -
Trre14g03065 914 CDD RecA-like_PEX6_r2 647 799 IPR047533 -
Trre14g03065 914 FunFam Peroxisome biogenesis protein 6 802 888 - -
Trre14g03065 914 Pfam ATPase family associated with various cellular activities (AAA) 675 800 IPR003959 GO:0005524|GO:0016887
Trre14g03065 914 Pfam ATPase family associated with various cellular activities (AAA) 360 512 IPR003959 GO:0005524|GO:0016887
Trre14g03065 914 ProSitePatterns AAA-protein family signature. 771 789 IPR003960 GO:0005524|GO:0016887
Trre14g03065 914 FunFam Peroxisome biogenesis protein 6 329 513 - -
Trre14g03065 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 583 IPR027417 -
Trre14g03065 914 Gene3D - 328 534 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03065 Trre-Chr14 37515328 37521518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03065 641 873 Calmodulin-binding Proteins AT3G56690 38.934 3.29e-38 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03065 K13339 - gmx:100820183 1434.85