Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03046 ATGGACGACGACGACGACTCACAACAACCTTTCTCCCAAACCCAAACCGAAACCTACCTAGCAGGTTTCATAATGGCCAACATCGTCGGTCTAAGATACTACACCGGCACAATAAACCGCCGTGAAATCCTCGGCCTAGTTCGCGACCCACTCAACCCATACGACACAAACGCTATCAAAGTTCTCAACACTCAATCCCTCCAAGTCGGTTTTATTGAACGCTCCGTCGCCGCCGTTCTTTCGCCGTTAATCGATGCTCATATTATTCAGATTGAAGGCATTGTTCAAACAAACACTCGCTCTAAGTTCCATATCCCTTGTCAGATTCATATTTTCTCTCATATATCTTCTTTTGAAGCTGTTCATGACGCTTTTCATGGTTCTACTGTTCATTTCATTTCTCATTCTGATCCTTCTTTTACTCTTTCTCACTCTGTTGCTGTTCAAGAAACTCGAGCTTATTTAACCACCGCCGTAACAACCACCACCGGTAACAATAAAAGTAAAATCAAAACCCTAGATCAAATATTCAAACTTGTTCGCGAAAATCTTGATGCTAAAAACCTAATTTCTGAACCGTTAAGTCCTCCTTCTAACATAGTTAAATCCGAATTGCTTCAGCATCAGAAGGAAGCATTAGGATGGCTTTTTCATCGCGAAAATTCCGATGATTTACCGCCGTTTTGGGAAGAGAAAGAGGGGAGTTTTGTCAATGTGTTAACTAATTATCAAACTAGTACACGACCGGAGTCTCTTCGTGGAGGGATATTCGCGGATGGGATGGGATTAGGGAAGACTTTGACATTGCTTTCGTTGATTGCTTTTGATAAAATGAAATGCGGGAAGAAAAGAAGTAGGAGTAGGGTTGAGATGAATAGTACATTGATTGTGTGTCCGCCTTCTGTCATTTCGACGTGGATAACTCAGTTGGAAGAGCATACTAACCGTGGTGCGTTGAAGACTTATATGTATTATGGTGATAGAAGGACTCAAGTTGCTGAGGAATTGAGAAAATATGATATTGTGTTGACTACTTATTCTACTTTGGGAGCTGAATTGCGGTGCCCGGATACTCCTGTGAAGACGTTGGAGTGGAGGAGGATTGTTTTGGATGAAGCACATACGATTAAGAATGTTAATGCTGGACAGAGTCAGGCTGTTATTGGTTTGAATGGTAAGAGGAGATGGGCTGTTACTGGTACACCTATTCAGAATGGTTCTTATGATTTGTTTTCTCTTATGGCTTTTTTGCATTTTGAGCCTTTTTCTATTAAGAGTTATTGGCAAAACTTGGTTCAACGCCCGCTTACTCAAGGCAAACAGACAGGGCTTAGTCGATTGCAGGTTTTGATGGCAGCAATATCATTACGAAGAACAAAAGACACTGCATTGGTGGGGCTTCCACCCAAGATTGTAGAGACTTGTTATGTTGAACTTTCATGTGAAGAGCGTAAACTGTATGATGATGTTAAAGAGGAAATAAAGTCGCTTATGATGCATTATAACAGTAATGACAGATTAGTGTATAGTTACTCGACGATACTAAGTATGATTCTAAGACTTCGTCAGATCTGTACTGATATGTCGATGTGTCCTTTGGATTTCAAGTCGTGTCTATTTTCTTCAACTGATATTGAAGATGTTTCCAAGAAACCTGAATTGCTGCAAACATTAGTTAGGATGCTACAAGATGGTGAATATTTTGATTGTCCAATTTGTTTATCTCCTCCAACGGATATTGTAATTACATGTTGTGCTCATATTTTCTGCCGAGAATGTATTCTGAAAACTCTACAGCGCAGCAATTCCAGTTGTCCACTTTGTCGACGCTCTCTCTCAGAATTTGACTTATTCTCAGCCCCCCCTGAATCTTCCAAGACTGATGAACTGTCCACACCAGAAGTAGGGTCATCCACGAAAGTCTCTACTTTGATAAAGCTTCTTACAGAATCAAGGGGTCAAAATCCAGCTACCAAATCAGTTGTATTTTCACAATTCCGTAAAATGCTACTATTGTTAGAAGAGCCGTTAAAATCAGCTGGCTTTAAAACATTGCGTCTTGATGGGACACAGAATGCAAAACAAAGGGCTCAAGTTATTGAAAAATTTCAACTCTCAAAAATTGATGAGCCAATGATTCTGCTTGCAAGTCTCAAGTCTTCAAGTACAGGTATAAATCTTACGGCCGCCTCTAGAGTGTACTTAATGGAGCCATGGTGGAATCCGGCAGTTGAAGAACAAGCAATGGATCGCGTTCACCGCATTGGACAGAAAGAAGAAGTGAAGATTATTAGACTGATAGCTAAAAATAGCATTGAAGAGAAAATATTAAAGTTGCAAGAGAGGAAGAAAGAGATAACAAGCCAAGGATCTGGGAGGAGATCAAAAGATATTGCTGGTATGGGCATAGATGATCTCCATTTTGTTTTAGGAGAGTAG 2439 0.4039 MDDDDDSQQPFSQTQTETYLAGFIMANIVGLRYYTGTINRREILGLVRDPLNPYDTNAIKVLNTQSLQVGFIERSVAAVLSPLIDAHIIQIEGIVQTNTRSKFHIPCQIHIFSHISSFEAVHDAFHGSTVHFISHSDPSFTLSHSVAVQETRAYLTTAVTTTTGNNKSKIKTLDQIFKLVRENLDAKNLISEPLSPPSNIVKSELLQHQKEALGWLFHRENSDDLPPFWEEKEGSFVNVLTNYQTSTRPESLRGGIFADGMGLGKTLTLLSLIAFDKMKCGKKRSRSRVEMNSTLIVCPPSVISTWITQLEEHTNRGALKTYMYYGDRRTQVAEELRKYDIVLTTYSTLGAELRCPDTPVKTLEWRRIVLDEAHTIKNVNAGQSQAVIGLNGKRRWAVTGTPIQNGSYDLFSLMAFLHFEPFSIKSYWQNLVQRPLTQGKQTGLSRLQVLMAAISLRRTKDTALVGLPPKIVETCYVELSCEERKLYDDVKEEIKSLMMHYNSNDRLVYSYSTILSMILRLRQICTDMSMCPLDFKSCLFSSTDIEDVSKKPELLQTLVRMLQDGEYFDCPICLSPPTDIVITCCAHIFCRECILKTLQRSNSSCPLCRRSLSEFDLFSAPPESSKTDELSTPEVGSSTKVSTLIKLLTESRGQNPATKSVVFSQFRKMLLLLEEPLKSAGFKTLRLDGTQNAKQRAQVIEKFQLSKIDEPMILLASLKSSSTGINLTAASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIIRLIAKNSIEEKILKLQERKKEITSQGSGRRSKDIAGMGIDDLHFVLGE 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03046 812 ProSitePatterns Zinc finger RING-type signature. 585 594 IPR017907 -
Trre14g03046 812 Pfam HIRAN domain 25 114 IPR014905 GO:0003676|GO:0008270|GO:0016818
Trre14g03046 812 Gene3D - 624 800 IPR027417 -
Trre14g03046 812 CDD SF2_C_SNF 638 767 - -
Trre14g03046 812 Gene3D - 237 459 IPR038718 -
Trre14g03046 812 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 160 809 - -
Trre14g03046 812 Pfam Helicase conserved C-terminal domain 640 756 IPR001650 -
Trre14g03046 812 SMART ultradead3 201 427 IPR014001 -
Trre14g03046 812 Coils Coil 769 789 - -
Trre14g03046 812 Pfam SNF2-related domain 208 530 IPR000330 GO:0005524|GO:0140658
Trre14g03046 812 SMART ring_2 570 608 IPR001841 -
Trre14g03046 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 811 IPR027417 -
Trre14g03046 812 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 246 420 IPR014001 -
Trre14g03046 812 SMART HIRAN_2 21 115 IPR014905 GO:0003676|GO:0008270|GO:0016818
Trre14g03046 812 SUPERFAMILY RING/U-box 566 618 - -
Trre14g03046 812 ProSiteProfiles Zinc finger RING-type profile. 570 609 IPR001841 -
Trre14g03046 812 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 643 799 IPR001650 -
Trre14g03046 812 Gene3D - 12 131 - -
Trre14g03046 812 SMART helicmild6 671 756 IPR001650 -
Trre14g03046 812 Pfam Ring finger domain 569 609 IPR001841 -
Trre14g03046 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 554 622 IPR013083 -
Trre14g03046 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 453 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03046 Trre-Chr14 37292955 37298470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03046 1 796 RAD5 or RAD16-like Gene Family AT5G05130 57.814 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre14g03046 SNF2_N 8.5e-76 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03046 K15711 - fve:101311093 986.867