Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03044 ATGAAGTCAGAAGAGCTTGATCACTGGAGAAAGTACTTTCGTTCATCGAATTCCGACATCTTTAGCATCATTGATAATGCTATTGTTGTTGCTGCAAAGGATTGTCCTAAGGAGTTTAAGTCTAGGAGAGACAAAATTGCTGAGAAGCTGTTCTCAGTTTTGCTGAATCGTTGTAAGGACTGTGAGAAGGTTGAAGTGCCTGTTACTGATAATGAAAATGGTGAAGTTTGCAAGAGAGGTTCTGTTAAAATTGGTGCTAGCAAAGAGAGTAATGTGAATGGTGCTGGTAGGGAAGAGGAAGCCAATGAGGTGATGAAGGTGAAGCCTGCTAGTAATTATAGCTTTGATGAAGCTGAAGCTCTTACTGATGAGCTTGAGGCAGAATCCCAAGCTATTGCTGAGGTTTTGAGGATCAAAGAGATTCTCAGACACAAGGAAGATGAGCCTGAGTCAGTGCTGTTTGAGTCACTAAGGAGGCTTGAACTGATGGGAATGTCTATGAATATTCTCGAGTCAACTGCGATCGGAAAGGCTGTCAATCCTCTCCGGAAGCATGGATCCAAGAAAGTCCGTGATCTTGCAAAGATTCTTATCCTTGCTTGGAAGGAAATGGTGGATACATTTTATGCCAAACGTGACCCAGATGCAGGAGAAAACACCCCGGAATCGTTAAATCCATCTGGCGTTGTGAATGCTGAAGAAGAAGAAGAAGAAGGAGGACTTCCGTCAATTCCTTTGGACGAAGGTGCTTTCCTATTGGCTCCACCCGGAATGGAACTCTCTGATCAGTTCTTCGATGGGATGGATGAAGATGGAAATATTCAAAAGAGTGCGCCACTCAACAAGAACCATGGCAATGGCAGAAGGCCAGCTATGGACACTGAAATTAAGGACAAGAGAAATGTGCCGGCATTTAATGAAACAGCCATCATTCCCAAGGACAATAAGAGTCAGCAATTGAAGAAGAATGAGGCTGAAATGAGGCTAAATAAACCGAAACCGGTAGCTGCTGATGCTGGCCCTCGTAGATACCTAACGTCAAACATTCGGAGAAATGGCAATGTGGAGCCAAAGATGCAGCAGAAACTGGAAAGCAGTGCTGTCCCAAAGAGGCCTCTCAATGCTCAGCAAGATAATTCCAAATGTTCTGATGATGCTGCTAAGCTCGAAGCCACTAAGCGGAGACTTCAAGAGAGTTATCAACAAGCTGAAAATGCTAAGAGGCAAAGGACAATTCAAGTGATGGAAATCAATGAACTTCCAAAGCAAGGGGCTGCCCACCGGAACACACATTTCAAACCAGGAAATCAAAATAGGCAGCGGGGTCTTATGCGAAGATAG 1341 0.4415 MKSEELDHWRKYFRSSNSDIFSIIDNAIVVAAKDCPKEFKSRRDKIAEKLFSVLLNRCKDCEKVEVPVTDNENGEVCKRGSVKIGASKESNVNGAGREEEANEVMKVKPASNYSFDEAEALTDELEAESQAIAEVLRIKEILRHKEDEPESVLFESLRRLELMGMSMNILESTAIGKAVNPLRKHGSKKVRDLAKILILAWKEMVDTFYAKRDPDAGENTPESLNPSGVVNAEEEEEEGGLPSIPLDEGAFLLAPPGMELSDQFFDGMDEDGNIQKSAPLNKNHGNGRRPAMDTEIKDKRNVPAFNETAIIPKDNKSQQLKKNEAEMRLNKPKPVAADAGPRRYLTSNIRRNGNVEPKMQQKLESSAVPKRPLNAQQDNSKCSDDAAKLEATKRRLQESYQQAENAKRQRTIQVMEINELPKQGAAHRNTHFKPGNQNRQRGLMRR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03044 446 SMART TFS2_5 132 207 IPR003617 GO:0005634
Trre14g03044 446 MobiDBLite consensus disorder prediction 422 446 - -
Trre14g03044 446 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 5 434 IPR044805 -
Trre14g03044 446 CDD TFIIS_I 132 206 - -
Trre14g03044 446 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 217 IPR035441 -
Trre14g03044 446 ProSiteProfiles TFIIS N-terminal domain profile. 133 208 IPR017923 -
Trre14g03044 446 Pfam TFIIS helical bundle-like domain 157 205 IPR017923 -
Trre14g03044 446 MobiDBLite consensus disorder prediction 213 241 - -
Trre14g03044 446 Coils Coil 118 138 - -
Trre14g03044 446 MobiDBLite consensus disorder prediction 352 384 - -
Trre14g03044 446 Coils Coil 379 413 - -
Trre14g03044 446 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 124 216 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03044 Trre-Chr14 37205932 37208353 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Trre14g03044 Med26 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03044 - - gmx:100775579 447.973