Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03018 ATGACACTCTCTCCCCAAAACCAATCTCTACAAAATGAACTCAAAATTCAAGAAATTGGAAATGAAGGTCTCACGAAACAGATTCTCAGAAAAGGTGTCACTTGGCAAACTCCATTTTCTGGTGACCAAGTTCAAGTTCATTTCAGTGGACAAGTTGAAAATGGACCATCTCTTGAATCAAGTTATGATAAAGGGTCGTCGTTTCATTACAAATTAGGCCAAGGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCTACCATGAAGAGAGGGGAGAGAGCAGTATTCAAAATATCACCTAACTTAGCATATGGAGAAGTAGGTTCTCCACCGTTGATTCCTCCAAATGCAACTCTTATTTTCGAGATTGAAATGTTGTGTTGGAGTACCATTAGGGACTTGACTGGTGATGGAGGAATCATGAAAAAGACAATAAAGGAAGGAGAAGGATGGGCTACTCCGAAAGAGCTTGATGAAGTGCTAGTGAAATATGAAGCAAGGCTTGAAAATGGAATGCCTATCAAGTCTGATAAAGGCGTAGAGTTTAATGTAAGTGATGGCTATCTTTGTCCAGCAATGAGTATAGCAGTAAAGACGATGCGAAAAGGCGAGGTGGCCGAGCTGAGTATGAAATTCTTTTATGGCATTATTAGTCAAATTTCAAATAGAACCATTGAGCTTGATGGTTTACCAGACTCCAAGTTAATTAGTATCAAACTTGAGTTGGTATCATGGAAAATTGTTACTGATATCACAGGAGATAAGAAAATACTGAAAAAAGTTAATAAAGCTGGTGAGGGGATTGATCGTCCTAATGAAGGATCTCATGTGAAAGTCATATATTTATGTAAAGGAGAAGATGGTACAATTATAGAGAGGAAAGGGTCAAAGGAAGAACCTTTTGAGTTCACAATTCAAGAAGAACAAGTTTATGAGGGTCTAGAAAGAGCAATAATGACGATGAAAAAAGAAGAACAAGCTTTGGTGACTATCAATGCTGAATATTTGTGTGACCATAGTAATTTGCAAGGAAACAAGGCCAATAATAATAAAATTTATTTTGAAGTTGAATTAATTGATTTCACTAAGGAGAAGACATTTTGGAAAATGGACACTCAAGAGAAACTAGAAGCTTGTGAGCAAAAGAAGCATGATGGAAATCTTCTGTTCAAGGCTCAAAATTTTAGTTGCGCATCTAAGAAATATGAAAAGGCGATAAAATACATTGAATTTGATCACACATTTAGCGAAGACGAGAAGCTTCTTGCTAACACCTTGAGATTATCATGTAATTTGAACAATGCTGCTTGTAAACTTAAATTAGAGGAGTACATTGAAGCTGCCAGGTTATGCACAAAGGTCCTAGAACAAGATCCCTTAAATGTGAAGGCTCTTTATAGAAGATGCCAAGCATACCTTAAAACATCAGACTTGGAGAAAGCTGAAGCTGACATTAAAAGAGCTTTGATTATTGATCCAAATAACAGAGACATTAAACTTGAGTACAAAGAGCTCAAACTGAAGCAAAAGGAATACACAAAATATGAAGCTGATATCTTTAGCACAATGGTTTCAAAGATGAATTAG 1587 0.3648 MTLSPQNQSLQNELKIQEIGNEGLTKQILRKGVTWQTPFSGDQVQVHFSGQVENGPSLESSYDKGSSFHYKLGQGEVIKGWDEGVATMKRGERAVFKISPNLAYGEVGSPPLIPPNATLIFEIEMLCWSTIRDLTGDGGIMKKTIKEGEGWATPKELDEVLVKYEARLENGMPIKSDKGVEFNVSDGYLCPAMSIAVKTMRKGEVAELSMKFFYGIISQISNRTIELDGLPDSKLISIKLELVSWKIVTDITGDKKILKKVNKAGEGIDRPNEGSHVKVIYLCKGEDGTIIERKGSKEEPFEFTIQEEQVYEGLERAIMTMKKEEQALVTINAEYLCDHSNLQGNKANNNKIYFEVELIDFTKEKTFWKMDTQEKLEACEQKKHDGNLLFKAQNFSCASKKYEKAIKYIEFDHTFSEDEKLLANTLRLSCNLNNAACKLKLEEYIEAARLCTKVLEQDPLNVKALYRRCQAYLKTSDLEKAEADIKRALIIDPNNRDIKLEYKELKLKQKEYTKYEADIFSTMVSKMN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03018 528 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 157 246 IPR001179 GO:0003755
Trre14g03018 528 FunFam Peptidylprolyl isomerase 367 522 - -
Trre14g03018 528 PANTHER PEPTIDYLPROLYL ISOMERASE 11 126 - -
Trre14g03018 528 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 270 359 IPR001179 GO:0003755
Trre14g03018 528 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 38 126 IPR001179 GO:0003755
Trre14g03018 528 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 153 215 IPR001179 GO:0003755
Trre14g03018 528 Gene3D - 11 131 IPR046357 GO:0003755
Trre14g03018 528 ProSiteProfiles TPR repeat profile. 462 495 IPR019734 GO:0005515
Trre14g03018 528 FunFam Peptidyl-prolyl cis-trans isomerase 16 129 - -
Trre14g03018 528 Gene3D - 247 364 IPR046357 GO:0003755
Trre14g03018 528 Pfam Tetratricopeptide repeat 462 495 IPR001440 GO:0005515
Trre14g03018 528 SUPERFAMILY TPR-like 369 525 IPR011990 GO:0005515
Trre14g03018 528 Coils Coil 524 528 - -
Trre14g03018 528 Coils Coil 7 27 - -
Trre14g03018 528 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 274 362 IPR001179 GO:0003755
Trre14g03018 528 Gene3D - 132 246 IPR046357 GO:0003755
Trre14g03018 528 SUPERFAMILY FKBP-like 134 214 - -
Trre14g03018 528 SUPERFAMILY FKBP-like 243 382 - -
Trre14g03018 528 SUPERFAMILY FKBP-like 20 128 - -
Trre14g03018 528 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 41 129 IPR001179 GO:0003755
Trre14g03018 528 Gene3D Tetratricopeptide repeat domain 365 522 IPR011990 GO:0005515
Trre14g03018 528 SMART tpr_5 428 461 IPR019734 GO:0005515
Trre14g03018 528 SMART tpr_5 379 412 IPR019734 GO:0005515
Trre14g03018 528 SMART tpr_5 462 495 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03018 Trre-Chr14 36534054 36537834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03018 18 527 Calmodulin-binding Proteins AT5G48570 52.703 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03018 - - psat:127126483 855.514