Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03005 ATGTCACACATATCAAATCAAATTGCAATGGGGAAGGCTCCAATGATTGAAGAATCTCAATCCAATGTGGATAATCAAAACAAGAGGAAATCAATTGTGGCGGAAGGTGTTGCAATTCAAAAGAAGGGTTACAAATGTGTCTATTGTGAAAAATCATTTGATACTCCACAAGCCCTAGGAGGGCACCATCGTAGTCACAAAAATGAACGAAATGTCAAGCCTAGGCTTACCCCTAGTTCAAGGGGAAAAGAGAGATTTAGCACTGAAAAATGTAAGGTTATAATGGCAAATATTGATGCATGGTTTAAGGCTAATAGGATGAATGATCCAAAAGTGAAAGAGGCTGGTCAAAAGGGTACGAAACCTGATTTCGAAAATAGTGATGTTGGTGAGGGTCAGGAGAATTGA 408 0.3897 MSHISNQIAMGKAPMIEESQSNVDNQNKRKSIVAEGVAIQKKGYKCVYCEKSFDTPQALGGHHRSHKNERNVKPRLTPSSRGKERFSTEKCKVIMANIDAWFKANRMNDPKVKEAGQKGTKPDFENSDVGEGQEN 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03005 135 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Trre14g03005 135 MobiDBLite consensus disorder prediction 57 88 - -
Trre14g03005 135 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Trre14g03005 135 Gene3D Classic Zinc Finger 18 101 - -
Trre14g03005 135 MobiDBLite consensus disorder prediction 106 128 - -
Trre14g03005 135 MobiDBLite consensus disorder prediction 60 88 - -
Trre14g03005 135 MobiDBLite consensus disorder prediction 105 135 - -
Trre14g03005 135 Pfam C2H2-type zinc finger 44 67 - -
Trre14g03005 135 SUPERFAMILY beta-beta-alpha zinc fingers 40 72 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03005 Trre-Chr14 36288179 36288586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03005 23 75 C2H2 Transcription Factor Family AT5G25160 38.889 3.45e-07 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g03005 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03005 - - psat:127130587 75.485