Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03004 ATGGCACAAGAAGAACCAACTATAGCTGGTGATGTTGTTGATGTTGAAGAACAGGTTGATGAAGAACCTGCTACTGATGAGATTGCTGTTCCACAGGTTGAAAAGGAATCTGTTGCTGATGAGGAGGAAAACACAGATATACCTACTGCTGACAATGCTATGTCAGTAGATGATGATGTGGTGGATGTGGATGCTATGGCTGACCTGGAGCAAACTGAGATTGAAGGTTGGACTGCTAGACTTCTTCCTCTCAGACATTTTGGTTACATTATTTTGACAACTTCTGCTGGCATTGTGGATCATGATGAGGAGGCTGGGAGAAAGAATGTTGGTGGCAAGGTCCTTGGCTTCATGTTAAAGATGAGTGACATATTATTCTCTCAATTGTGCTTAAGAGTTCCTCCTGCTACAGCTCCATCCTTTGGTGATGATGTGCAGCATGACAGAAATTTAAATCTCACTTGTGTAAACAAAAAATCTGACATTGATAATCATGCCCTTAAACAAGATAGTTTCCACTTCGGAGTCTAG 531 0.4162 MAQEEPTIAGDVVDVEEQVDEEPATDEIAVPQVEKESVADEEENTDIPTADNAMSVDDDVVDVDAMADLEQTEIEGWTARLLPLRHFGYIILTTSAGIVDHDEEAGRKNVGGKVLGFMLKMSDILFSQLCLRVPPATAPSFGDDVQHDRNLNLTCVNKKSDIDNHALKQDSFHFGV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03004 176 MobiDBLite consensus disorder prediction 10 24 - -
Trre14g03004 176 MobiDBLite consensus disorder prediction 1 52 - -
Trre14g03004 176 PANTHER 40S RIBOSOMAL PROTEIN S15A 68 118 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre14g03004 176 Gene3D - 63 118 - -
Trre14g03004 176 SUPERFAMILY Ribosomal protein S8 68 117 IPR035987 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03004 Trre-Chr14 36256919 36263114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03004 68 118 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 78.431 1.87e-21 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03004 K02957 - pvu:PHAVU_008G013500g 85.8853