Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02986 ATGGTGGTGCTTAACATGTCTGTGATGATTGTCATCACAGATGTCTGTGACACTCCTTCTATGAATCTAATGTGGTTGAATTGTGAAGACCCTTTGATCAACCATGACGACGATTGGACTAGAGAAGAGGATGATTCTCTTTTGATTATTGTCCAAAAGAAGGGTATCAGGAACTGGTTTGATATCTCTGTATCATTGGCCACAAACAGACTTCCATTTCAATGCCTGGCACGGTTCCAAAGGAGCTTAAATTCTTCGATGATAAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTTTGTTCTGCTGTTGCTTATTTTGGTGAGAGTGATTGGCAGTCTGTGGCTACTGTTTTAGAACGGCGGACAGGAACCCAGTGCTCAAATAGATGGAGAAACTCAATATGTCCTGTGAGGAAAGGGAGCTTTACTCCCGAGGAGGATGAACGCCTTACTGTAGCATTCATGCTGTTTGGCCCGAAATGGAATCAAATAGCCAAATATGTTCCTGGCCGGATCCAATCTCAGTGCAGGGACAAATACCTTAATAGTTTGGATCCTTCTTTGAAATGGGGTGGGTGGACTGAGGAAGAGGATTTAAGATTAAAAGCCGCAATCACCAAGTATGGATATTGCTGGTCTAAGGTTGCTAAAGATGTGCCTCTCCGCACTGATTCTCAATGCCTAAAGAGATGGAGGGTAATATGTCCTGAACAAGTTCCTCTGCTTCAAGAAGCAAGGAAGAGGCAAAGATCACTTCGTGCCTGTAACTTTGTCGATCGAGAATCTGAACGTCCGGCCCTTGCACTGAATGACTTCATTCCTTTACAAATGGTAGTTCCACCATCTGATGTTGGTGCTGAAAATCTTCAAAGGAAACGGAAAAGAAAGACACGCGGCATTCCCAAGAATGTGAAATCGAAAAAACATGCAAAAGAGACTCAACTTTGTACCGGGGAAGTACAAAATGCAGATCTCAAGAAAGAGAGGCCTAAAAGACATGCAAAAAAGGCATCATTCTGTCCCGAGGATGTACAAGATATAGTTCCAATGAAAGAGAAGCCTAAAAGACATTCAAAGAAGGCTCGAACTTGTCCCGAAGAAGTACAACATAAAGCAGCATATAGTGATAAGGTCAAGACTGGTGGTGGAACTGTTCCATTCTCACCGAGCAATATTCCCCAAAAAATGAGATCTAAAAGACGTGCTAGAAAGGCTCAAATTTGTCCCAAGGAAGTAGAGAATATAGCATGTAGTGACAAGGTCAAGTCCTGTATCAAAAGTTCGGAAACTCAAGATGGAGACAACATAACACATGCATGCTTTTTGCAGAAAAAATCAAAGAAGAAACTATCTAAAGGTACCAAAAATGCTAGCCAGGCTTTGTCTTCTTCTAAGCAGGTTGAAAATCAAATCCTATGTGGGGAGCAAGACAGATTGTTTATGCCATGTGATATTGGTGGAACTGAAGATTTGCTAACGCAAGCGGAAGTTGATTTTAGCAGACAAGTAAGAAAACCAGAAAGTGCAAATGCAGCTACAAAACCAGAGGATGCGCACAATTTGAATGGTAGTAACCATGATATGCCTCTTAAGTTCTATGTGAGAAAGAAAAAGAAATTGATTCAAGCTACTGAAGGACGTCGTGTTTGTTGA 1656 0.4161 MVVLNMSVMIVITDVCDTPSMNLMWLNCEDPLINHDDDWTREEDDSLLIIVQKKGIRNWFDISVSLATNRLPFQCLARFQRSLNSSMINSEWTEEEDAQLCSAVAYFGESDWQSVATVLERRTGTQCSNRWRNSICPVRKGSFTPEEDERLTVAFMLFGPKWNQIAKYVPGRIQSQCRDKYLNSLDPSLKWGGWTEEEDLRLKAAITKYGYCWSKVAKDVPLRTDSQCLKRWRVICPEQVPLLQEARKRQRSLRACNFVDRESERPALALNDFIPLQMVVPPSDVGAENLQRKRKRKTRGIPKNVKSKKHAKETQLCTGEVQNADLKKERPKRHAKKASFCPEDVQDIVPMKEKPKRHSKKARTCPEEVQHKAAYSDKVKTGGGTVPFSPSNIPQKMRSKRRARKAQICPKEVENIACSDKVKSCIKSSETQDGDNITHACFLQKKSKKKLSKGTKNASQALSSSKQVENQILCGEQDRLFMPCDIGGTEDLLTQAEVDFSRQVRKPESANAATKPEDAHNLNGSNHDMPLKFYVRKKKKLIQATEGRRVC 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02986 551 CDD SANT 142 185 IPR001005 -
Trre14g02986 551 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Trre14g02986 551 MobiDBLite consensus disorder prediction 353 375 - -
Trre14g02986 551 Pfam Myb-like DNA-binding domain 39 100 - -
Trre14g02986 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 240 IPR017930 -
Trre14g02986 551 MobiDBLite consensus disorder prediction 353 401 - -
Trre14g02986 551 ProSiteProfiles Myb-like domain profile. 139 185 IPR001005 -
Trre14g02986 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 139 IPR017930 -
Trre14g02986 551 SMART sant 35 85 IPR001005 -
Trre14g02986 551 SMART sant 190 238 IPR001005 -
Trre14g02986 551 SMART sant 88 137 IPR001005 -
Trre14g02986 551 SMART sant 139 187 IPR001005 -
Trre14g02986 551 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 23 531 - -
Trre14g02986 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 87 IPR017930 -
Trre14g02986 551 SUPERFAMILY Homeodomain-like 165 236 IPR009057 -
Trre14g02986 551 Pfam Myb-like DNA-binding domain 193 234 IPR001005 -
Trre14g02986 551 Pfam Myb-like DNA-binding domain 140 183 IPR001005 -
Trre14g02986 551 MobiDBLite consensus disorder prediction 292 312 - -
Trre14g02986 551 MobiDBLite consensus disorder prediction 504 526 - -
Trre14g02986 551 ProSiteProfiles Myb-like domain profile. 39 83 IPR001005 -
Trre14g02986 551 MobiDBLite consensus disorder prediction 292 306 - -
Trre14g02986 551 Gene3D - 139 189 - -
Trre14g02986 551 Gene3D - 190 238 - -
Trre14g02986 551 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Trre14g02986 551 CDD SANT 91 133 IPR001005 -
Trre14g02986 551 Gene3D - 38 87 - -
Trre14g02986 551 Gene3D - 90 138 - -
Trre14g02986 551 ProSiteProfiles Myb-like domain profile. 186 236 IPR001005 -
Trre14g02986 551 CDD SANT 194 233 IPR001005 -
Trre14g02986 551 SUPERFAMILY Homeodomain-like 87 181 IPR009057 -
Trre14g02986 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 185 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02986 Trre-Chr14 35987854 35990811 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02986 25 368 MYB-Related Transcription Factor Family AT3G18100 47.293 1.06e-98 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g02986 Myb_DNA-bind_6 7.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02986 K09422 - gmx:100818474 552.362