Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02952 ATGATGTCCAGTGCATGTCGTAGTTTACTAACCCATAACCACCTTCTGTTATCCCGCTCGGTCACCCTTTCCCCTCAACCAACTGCCCTTCAATTTCAATCACCATCTTCTCTACTGCTCCCTCCTATCCGCTCTCCTCCTCCCTTCAACCAATTGCGCTTCCGTCATTCTCGTCTCTCTGCTTTCTCCGGTGACGGTTCCGGCGGTACTGGTGGAACTGGTGGTGATGGTGGATGGAATTCCGGTGACAATGAATCCGATGATGGAGGGGGAATATGGTCCTTTTTGTCATGCATTGCAAAGAAGATAGAGCCTATGAATACGAATACTTTAGCATCATCTGTTTGGTGGGTGTTTGGATTTTATTTGATTGTTGTCGGTGGTCAACCACTTCTCGAAGATTCTCTTTGTCTCTACTGGATGACAGTGCTCTTTCCAGACTTTGAAGTTTTTATTATGTTTTGCATCGGGATGGCATTTATAGTTTTCTTCGCTCTCTTCTGCATCATCCCAATAATAGCATTAGCTTATGCTTTAAGAATCAGGGAAGGTGCTTCAGAAGATGATATCAGGTCACTTCCTATGTATAGGTTTAGTCGGTCAAATATAATGGTTATGATTGATGACAACCAGAAGCAATTTGTTGAAGCAAGAACCGGTTCATACAATCAAAGCCATATCAGTGAACTATCTCTTCGTCCAGATGATTCTGAATGCTGTATCTGCCTATGTCCATATGTTGATGGAACAGAACTGTATCAGCTTCCCTGTACCCACCATTTTCATTGCGCATGCATCAGCCGGTGGCTTCGGACAAAAGCAACTTGCCCGCTCTGCAAATTTAATATCCGAAGAGGCGATACATTGGTTTGA 873 0.4399 MMSSACRSLLTHNHLLLSRSVTLSPQPTALQFQSPSSLLLPPIRSPPPFNQLRFRHSRLSAFSGDGSGGTGGTGGDGGWNSGDNESDDGGGIWSFLSCIAKKIEPMNTNTLASSVWWVFGFYLIVVGGQPLLEDSLCLYWMTVLFPDFEVFIMFCIGMAFIVFFALFCIIPIIALAYALRIREGASEDDIRSLPMYRFSRSNIMVMIDDNQKQFVEARTGSYNQSHISELSLRPDDSECCICLCPYVDGTELYQLPCTHHFHCACISRWLRTKATCPLCKFNIRRGDTLV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02952 290 ProSiteProfiles Zinc finger RING-type profile. 239 280 IPR001841 -
Trre14g02952 290 Pfam Ring finger domain 238 280 IPR001841 -
Trre14g02952 290 SMART ring_2 239 279 IPR001841 -
Trre14g02952 290 MobiDBLite consensus disorder prediction 62 83 - -
Trre14g02952 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 287 IPR013083 -
Trre14g02952 290 PANTHER TARGET OF ERK KINASE MPK-1 107 284 - -
Trre14g02952 290 SUPERFAMILY RING/U-box 233 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02952 Trre-Chr14 32410576 32415669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02952 52 287 C3H Transcription Factor Family AT1G68070 42.017 4.50e-52 172