Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02937 ATGGTGAGAAAGAGAAAACTCGTCGCAAAATCTTCTCAACCAGAGGAACCTCCACTCAAGCAACATCAACCGGACCCCGAACCTGAACCGGAGCCATACATCCCTACCGACGAATATGAAGAAGTTGAAGAAGAAGTTGAATACGAAGAAGTAGAGGAAGAAGAAGAAGTAGAGGAAGAGGAAGAAGACGAAGAAGAAGAAGAAGAAACTCAAGGTGGTGGAGAGTATCAAGACGAAGACGATGAACCGATTCAGAAGCTTGTAGAACCTTTCACAAAAGAACAGATCGTGAGTCTTCTTTGTGAAGCTGCATCTAAGCATCGTGATGTTGCTGATCGGATCAGGAAAATTGCTGACGGAGATGCGTCGCATAGGAAAATATTTGTTCATGGTTTGGGATGGGATACAACTTCAGCAACCCTAATTAACGCGTTTTCGCAGTACGGTGAAATTGAGGATTGTAAAGCGGTTACTGATAAGGTTTCTGGTAAATCTAAGGGTTATGGATTTATTCTCTTTAAAAGAAGAAGTGGTGCGCGAAATGCGTTGAAGGAGCCGCAGAAGAAGATTGGGAATAGAATGACGGCGTGCCAGCTGGCTTCTATTGGTCCTGTGCAGCAAACTCCGCAGCCGGTGCCACAGTTGGTTCCGCAAGGCTCGGAGTATACGCAGAGGAAGATTTATGTTAGCAATGTTGGTCCTGATTTGGAGGCGCAGAAACTGTTTGCTTATTTTTCGAGGTTTGGAGAGATTGAGGAAGGGCCTTTAGGGCTTGATAAGGTGACTGGAAAGCCGAAAGGGTTTTGTTTGTTTGTTTATAAGAGCGCTGAGAGTGCGAGGAGGGCGCTGGAAGAGCCTCATAAGGAATTTGAGGGACATATTTTGCATTGTCAGAGGGCAATTGATGGTCCTAAGGTTGTGAAGACACAACAACATCAACAGCCGCTGCCGCAGCAACATGTGAATCCATTGAATCAATTGAATCCATTGACTCAGAGGACACAATATCAGAGAAATGACAATGTTGGATTTGTTGGTGGTAGTAGTGTTGCAGTTAACCAGCCAGGAGGGCACTTAATGGCGCCGACAGGACCTGCAGCCGGGTACAATCAGGCTGCTGCTTCGGCTGTGCAGGGGCTGAACCCGGTGCTGACACCTGCTCTTGGACAGGCGTTGACGGCACTGCTTGCGTCTCAGGGTGCTTCTTTGGGGCTGTCTAATTTGTTAGGGAGTCTTGGAACAAGTAGTGCGGTTAATCCTGGTGTTCCTGCTGTGGCACATGGAGTTCAGAATGGATACAGTGCTCAGCCTGCTATAAGTCCATCACTTATGGGAGCATATGGGAATACAGTGCCACAGGCTGGGTTGCTGCAATACCCGAACCAGCAGATTGGACAAGTTGGGTGGCAGATTCTACATAAGTGCATCAGTCTTTTATTACTAGCCTGGTGA 1452 0.4718 MVRKRKLVAKSSQPEEPPLKQHQPDPEPEPEPYIPTDEYEEVEEEVEYEEVEEEEEVEEEEEDEEEEEETQGGGEYQDEDDEPIQKLVEPFTKEQIVSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPQPVPQLVPQGSEYTQRKIYVSNVGPDLEAQKLFAYFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQRAIDGPKVVKTQQHQQPLPQQHVNPLNQLNPLTQRTQYQRNDNVGFVGGSSVAVNQPGGHLMAPTGPAAGYNQAAASAVQGLNPVLTPALGQALTALLASQGASLGLSNLLGSLGTSSAVNPGVPAVAHGVQNGYSAQPAISPSLMGAYGNTVPQAGLLQYPNQQIGQVGWQILHKCISLLLLAW 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02937 483 Gene3D - 209 317 IPR012677 -
Trre14g02937 483 MobiDBLite consensus disorder prediction 31 78 - -
Trre14g02937 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 193 IPR000504 GO:0003723
Trre14g02937 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 295 IPR000504 GO:0003723
Trre14g02937 483 MobiDBLite consensus disorder prediction 1 80 - -
Trre14g02937 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 234 IPR000504 GO:0003723
Trre14g02937 483 Coils Coil 39 71 - -
Trre14g02937 483 Gene3D - 36 208 IPR012677 -
Trre14g02937 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 314 IPR000504 GO:0003723
Trre14g02937 483 SMART rrm1_1 226 298 IPR000504 GO:0003723
Trre14g02937 483 SMART rrm1_1 126 198 IPR000504 GO:0003723
Trre14g02937 483 SUPERFAMILY RNA-binding domain, RBD 207 311 IPR035979 GO:0003676
Trre14g02937 483 SUPERFAMILY RNA-binding domain, RBD 123 207 IPR035979 GO:0003676
Trre14g02937 483 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 32 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02937 Trre-Chr14 32077505 32080654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02937 224 316 C2H2 Transcription Factor Family AT2G19380 36.170 1.39e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02937 K12741 - gmx:100784200 488.034