Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02882 ATGTCATTCTTGAAGCCCGATATTGCCCTCAAAAGGGCAGAAGATTTAATCAATGTTGGGCAAAAGCAGGAAGCTCTTTATACTTTGCACGACCTTATTACTTCGAAAAGATACCGAACATGGCAGAAAACACATGAACTGATTATATTTAAGTATGTAGAGTTGTGCGTAGAGATGCGAAAAGGACAGTTTGCGAAGGATGGATTGATCCAGTATCGTTCGATATGTCAGAATGTGAATGTTAGTTCGCTGGAGGAAGTGATTAAGCATTTTATCAACCTATCAACAAAGAAAGTTAAACAAGCTTGTAGCGAGGCGCAGACATTAGAACAAGGTCTCGATGTTGATGACTTAGAGGCATATAAAAGGCCAGATGACTTGATGATGAGTTATGTCGGTGGGGAGAAAGGAAAGGATAGATCTGATCAGGAGCTTGTTACCCCATGTTTTAAATTTCTTTGGGAAAGTTACAAGATAGTGCTTGAAATATTGCGGAACAACTCAAAATTCGAAGCCTTATACGCTGCGACTGCTCATCGAGCTTTCAAGTTTTGTAAGCAGTATAAAAGAAAAACTGAATTTAGAAGACTCTGCGGAATCATAAGAAACCATTTGGCTAATCTTATCAAATATCGGGACCAACTAGACCGACCTGATCTTTCTTCTCCTGATAGCTTGCAATTGTATCTTAGATTTGACCAGCTGAAAATTGCTGCTGAACTTGAACTCTGGCAGGAAGCCTTTAGATCTGCTGAAGATATACATGGCCTAATGTGCGTGAGCTTCCACAAAAATCTGAGTCAGAAAGATATGGAGTTAATAGCTTCAGCTGTGGTTCTATCTGCACTTTCAGTGCTTCCTTATGAAAACAATTTTGAACTAGAGCATGAAATGGAGAGAAATTTGAAGATGGCTAAACTCATATTCTTTAATCTTGAAAATAAGACTGATAGCAAAACAACGCTCTCAAGGTCTTCACTTCTTGCTGAACTGGAATCAGAGGGTGTAATGTCCTATGCTGCACAAGAAGTGAAGGACATTTACTATCTTTTGGAACACAAATTTCTTCCCTCGGATCTTTCACTTGAAGTACTACCCTTGCTAAATAAAATTTCAAAATTAGGGGGTATCACTTCATCGATTCTAAACGTGCAATTGTCAGTGTATGTCCCAGCACTTAAAAAGTTAGCTACCCTGAGGTTGCTACAACAGGTGTCTAATGTGTACCAGACGATGAAGATTGAGAACTTAGCTGGGATGATGCCTTACTTTGATTTTTCTGTAGTGCAAAAAATTTCTGTAGATGCTGTTAAGCAGAAATTTCTATCAATGAAAGTTGACCACATGAAAAAAGTTGTAATTTTCGGAAAGAAGAGTCTTGAGGCTGATGACTTAAGGGATCGCTTGGCCGGTTTTGCGAAACAATTGAATAAGGCAAGACAAATGATATATCCTCCTGATAGGAAACAATCAAAACTTGAACTATTGCTCCCATGTTTGTTAGAGGTTGTGGCCAAAGATCACAAGATGATCCTTGCTCGAAAATCAATTATTGAGAAGAGGAAAGAAGAACAAGAACAGCTTCTTGAAATGCAACTAGAAGAAGAAAGGATTGCTGAAGAGGCAGCAGAACAAACGCAGCTTCCTGAAGTAAGCATTGCTGAAGAGTTAGCAGAACAGATAGCGGAAAGAGAACGTGAACAAGCTGAAGAGCGTAGAAAACTGGAGTTGTTTTTGACTAAACAACTCCGGAAGAGACAAGTAATGAAGAAGAAATGGCAGAAATTAGCTACAACCATGGATTATTTGGAAAGAGCAAAGAGAGAAGAGGCTGCTCCGCTTATCGAAGCGGCATATCAACAAGTATGTCTACTCGTGTACTTCAGATGTTGGACTTTGCATTTCTTTTGTCTATTGGAAATAATTGAATTTTTGCATATTTTTCATCTCATATTGCTGGGAAATAAAGAGATATATATAGAGAAAGTTGTCAATCATCGGCAAGTAGAATTGAACCGATTGATTATAGAAAGGGAGGAAAGAAAATCTAAGACTTTACAGTCCAGGAAACAAGAGAGGCAAAAAATGAGAAAACTGAAGTATTATCTTCAGTTGGAAGAAGAGAGACTACACAAATTGCATGCGGAGGAAGAAGCTCGGAAGCTTGAAGAGGCTGAGAGAAAAAAGAAGGATGAGACTGAACGCTTAGCAAAGTTGAATGAGAGTTATGAGAAGCAGAGGCAAAGAGAAAAAGAAATTGAAGAAAAGGCTGAGAAGCAAAAGAGGGAAGCATTGTTGGGCAGACCTATTAAACCAGCTTTGAGGCCTCGTCGTCCATCGCAGTCTGGTACTGCTGCTCCTTCAACTTCTGAACCCCCGGCTCCAGGGAAATATGTTCCCAAGTTCTGGCGAGGAGGAGCTTAA 2424 0.3948 MSFLKPDIALKRAEDLINVGQKQEALYTLHDLITSKRYRTWQKTHELIIFKYVELCVEMRKGQFAKDGLIQYRSICQNVNVSSLEEVIKHFINLSTKKVKQACSEAQTLEQGLDVDDLEAYKRPDDLMMSYVGGEKGKDRSDQELVTPCFKFLWESYKIVLEILRNNSKFEALYAATAHRAFKFCKQYKRKTEFRRLCGIIRNHLANLIKYRDQLDRPDLSSPDSLQLYLRFDQLKIAAELELWQEAFRSAEDIHGLMCVSFHKNLSQKDMELIASAVVLSALSVLPYENNFELEHEMERNLKMAKLIFFNLENKTDSKTTLSRSSLLAELESEGVMSYAAQEVKDIYYLLEHKFLPSDLSLEVLPLLNKISKLGGITSSILNVQLSVYVPALKKLATLRLLQQVSNVYQTMKIENLAGMMPYFDFSVVQKISVDAVKQKFLSMKVDHMKKVVIFGKKSLEADDLRDRLAGFAKQLNKARQMIYPPDRKQSKLELLLPCLLEVVAKDHKMILARKSIIEKRKEEQEQLLEMQLEEERIAEEAAEQTQLPEVSIAEELAEQIAEREREQAEERRKLELFLTKQLRKRQVMKKKWQKLATTMDYLERAKREEAAPLIEAAYQQVCLLVYFRCWTLHFFCLLEIIEFLHIFHLILLGNKEIYIEKVVNHRQVELNRLIIEREERKSKTLQSRKQERQKMRKLKYYLQLEEERLHKLHAEEEARKLEEAERKKKDETERLAKLNESYEKQRQREKEIEEKAEKQKREALLGRPIKPALRPRRPSQSGTAAPSTSEPPAPGKYVPKFWRGGA 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02882 807 Coils Coil 676 696 - -
Trre14g02882 807 Pfam PCI domain 323 457 IPR000717 -
Trre14g02882 807 ProSiteProfiles PCI domain profile. 286 460 IPR000717 -
Trre14g02882 807 MobiDBLite consensus disorder prediction 720 807 - -
Trre14g02882 807 Gene3D UVR domain 216 265 - -
Trre14g02882 807 Coils Coil 462 482 - -
Trre14g02882 807 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 653 784 IPR027512 GO:0005852
Trre14g02882 807 Coils Coil 514 542 - -
Trre14g02882 807 FunFam Eukaryotic translation initiation factor 3 subunit A 216 265 - -
Trre14g02882 807 Coils Coil 554 574 - -
Trre14g02882 807 Gene3D - 292 441 - -
Trre14g02882 807 Coils Coil 705 763 - -
Trre14g02882 807 MobiDBLite consensus disorder prediction 720 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02882 Trre-Chr14 30559014 30563847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02882 2 750 Eukaryotic Initiation Factors Gene Family AT4G11420 56.089 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02882 K03254 - gmx:100782598 900.197