Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02875 ATGGGAAGACCTCCTTGTTGTGACAAAGTTGGTGTCAAGAAAGGTCCTTGGACACCTGAAGAAGATATCATCCTTGTTTCTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTTCCTACTAATACAGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTATCTAAGGCCAGGAATCAAAAGAGGAAACTTTACTCCTCATGAAGAAGGAATGATTATTCATTTGCAAGCTCTTCTTGGTAACAAATGGGCAGCCATAGCTTCATACCTTCCACAAAGAACAGATAATGATATAAAAAACTATTGGAACACACATCTAAAGAAAAAGCTCAACAAATTTCAAGCAGCTTTAGATCAACCATCAAACTCAACTACAACTTATCTATCCAAGAGTTTTAGTGATAGAAGTTTAGATATAAGCAATAATCATGCTTCATCTCTTAAGCTTAATACTACTACTACTCAAAGTTCTCATCAATCTTCTTCTTCAACATATGCTTCAAGCACTGAAAATATTTCAAGACTTTTAGAAGGTTGGATGAGATCTTCTCCAAATTCACATATCAAAGGAAATTACCAATATGGTCATCAAGAATTTCAAAGCATTAATGATGATATTATGGATGATGATAATAATGTCTTTGAAAATAATGGTAAGTTATTAGTGAAATCTTCTTCACTTCCAGCTGATTTAAACCTTGAAATCCATCATTATAATAAAAAAATACAAGAAGGTGGAGTTTCACATGATCAAGAGTTTGATTCTATTCTTTCATTTGAGAATCTTAATAACAATGGTGTTACTTGGGATAAGTCAACTTGTGATTCTATGCCTCATGAAAAGTGTTCTACTTCTTCTTCTGATCACAAGAATAATATTAAGAATTTATGTGGAGCTCCTCCTCCATTGTCATTTCTTGAGAAGTGGTTATTGGATGAAAATGTTGGACATGTAGAGGAAATGATGGGATTATCACCAATGTTCTAA 1005 0.3403 MGRPPCCDKVGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLNKFQAALDQPSNSTTTYLSKSFSDRSLDISNNHASSLKLNTTTTQSSHQSSSSTYASSTENISRLLEGWMRSSPNSHIKGNYQYGHQEFQSINDDIMDDDNNVFENNGKLLVKSSSLPADLNLEIHHYNKKIQEGGVSHDQEFDSILSFENLNNNGVTWDKSTCDSMPHEKCSTSSSDHKNNIKNLCGAPPPLSFLEKWLLDENVGHVEEMMGLSPMF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02875 334 CDD SANT 69 112 IPR001005 -
Trre14g02875 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre14g02875 334 Gene3D - 13 66 - -
Trre14g02875 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre14g02875 334 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre14g02875 334 CDD SANT 16 61 IPR001005 -
Trre14g02875 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 219 - -
Trre14g02875 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre14g02875 334 SMART sant 66 114 IPR001005 -
Trre14g02875 334 SMART sant 13 63 IPR001005 -
Trre14g02875 334 Gene3D - 68 172 - -
Trre14g02875 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre14g02875 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre14g02875 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trre14g02875 334 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02875 Trre-Chr14 30520696 30522258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02875 1 119 MYB Transcription Factor Family AT5G62470 89.916 4.68e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g02875 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02875 K09422 - gmx:100802204 424.861