Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02865 ATGAGTTCACAAACCTTCAACAATGGCGACATGGCTCTTTTCCCATTATCTCCTATTCCTTCTTCTTTGACAAATCCTGAAATGGGTCTTCAGATTTTGAGACCTTCTTTGTTTCAGTCCAAAGAGATGATCATGAGAGAAACAAAGGAAGAAGATGCGTACTTTGGGATTCAGAGCAAAAACTTGTCTTTGAAACTTGGTGATGAAGTAGAAGAAGAAAAAAGCTCTGTTCCTGTGAAGATTGGTTACTCCAAACTTTGTTCTAGAGGTCATTGGAGACCAGCTGAAGATTCAAAACTTAAGGAACTTGTTGCTGAATTTGGTCCTCAAAATTGGAACTTGATTGCAGAACATCTTGATGGAAGATCAGGAAAAAGTTGCAGATTAAGGTGGTTTAATCAGCTAGACCCAAGGATTAACAAAAGAACATTTTCAGAGGAGGAAGAGGAGAGACTTTTAGCTGCTCATAAAATGTATGGTAACAAATGGGCTATGATTGCTAGACTTTTTCCAGGAAGAACAGATAATGCAGTGAAGAATCATTGGCATGTAATCATGGCTAGGAGACATAGGGAACAGTGTAGTGTGTATAGAAGGAGAAAGCCAATTGTTGAAAGCATTTCAAAGGGTTTGAAATTGAGTCTTTCAAATAATGCAGCTAGTGATTCAACTATCTCAAGCAACATTGATGGAAATGCATCAGCTTGTACTAATCTCTCCCTCACTCCTTCTTCAGTTAATCTAAATCCTCAACTGTTTCATAAATTTGTGGCTCCAGTTCAGAATTACCAAGATTTTGGATCACTAATTATGGGTAAGTCTAGAGAAAGTGTGGTTGCAACTAGGGATGTGAGTTTTGACAAATATTTTGGAGCTAGTAAGAAGCAAGAACAAGTGGAAAAGCTAAAGGTAATAGATGTGGTCCAGTCCAATTTTTCAGATTCAAACTCAGAAGTATCAGCATCTGAGTCAGTTACAACCAATAGGTCCAATATCTCAATTTCTGGTGAAAGTGAAAATGTTGGTATTAAGATTAACATGTTACCATTCATTGATTTTCTTGGAGTAGGAGCTACACATAGCTAA 1086 0.3738 MSSQTFNNGDMALFPLSPIPSSLTNPEMGLQILRPSLFQSKEMIMRETKEEDAYFGIQSKNLSLKLGDEVEEEKSSVPVKIGYSKLCSRGHWRPAEDSKLKELVAEFGPQNWNLIAEHLDGRSGKSCRLRWFNQLDPRINKRTFSEEEEERLLAAHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRHREQCSVYRRRKPIVESISKGLKLSLSNNAASDSTISSNIDGNASACTNLSLTPSSVNLNPQLFHKFVAPVQNYQDFGSLIMGKSRESVVATRDVSFDKYFGASKKQEQVEKLKVIDVVQSNFSDSNSEVSASESVTTNRSNISISGESENVGIKINMLPFIDFLGVGATHS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02865 361 Gene3D - 142 201 - -
Trre14g02865 361 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Trre14g02865 361 FunFam MYB transcription factor 89 140 - -
Trre14g02865 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 190 IPR017930 -
Trre14g02865 361 PANTHER MYB PROTEIN-RELATED 89 292 - -
Trre14g02865 361 SUPERFAMILY Homeodomain-like 89 182 IPR009057 -
Trre14g02865 361 CDD SANT 92 133 IPR001005 -
Trre14g02865 361 Gene3D - 89 140 - -
Trre14g02865 361 CDD SANT 152 183 IPR001005 -
Trre14g02865 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 135 IPR017930 -
Trre14g02865 361 ProSiteProfiles Myb-like domain profile. 89 135 IPR001005 -
Trre14g02865 361 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Trre14g02865 361 Pfam Myb-like DNA-binding domain 142 184 IPR001005 -
Trre14g02865 361 FunFam MYB transcription factor 142 211 - -
Trre14g02865 361 SMART sant 140 188 IPR001005 -
Trre14g02865 361 SMART sant 88 137 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02865 Trre-Chr14 30298018 30299754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02865 84 253 MYB Transcription Factor Family AT5G17800 59.887 2.02e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g02865 Myb_DNA-bind_6 5.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02865 K09422 - gmx:100791795 388.652