Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02864 ATGATGAGTTCACAAACCTTCAACAATGGCGACATGGCTCTTTTCCCATTATCTCCTATTCCTTCTTCTTTGACAAATCCTGAAATGGGTCTTCAGATTTTGAGACCTTCTTTGTTTCAGTCCAAAGAGATGATCATGAGAGAAACAAAGGAAGAAGATGCGTACTTTGGGATTCAGAGCAAAAACTTGTCTTTGAAACTTGGTGATGAAGTAGAAGAAGAAAAAAGCTCTGTTCCTGTGAAGATTGGTTACTCCAAACTTTGTTCTAGAGGTCATTGGAGACCAGCTGAAGATTCAAAACTTAAGGAACTTGTTGCTGAATTTGGTCCTCAAAATTGGAACTTGATTGCAGAACATCTTGATGGAAGATCAGGAAAAAGTTGCAGATTAAGGTGGTTTAATCAGCTAGACCCAAGGATTAACAAAAGAACATTTTCAGAGGAGGAAGAGGAGAGACTTTTAGCTGCTCATAAAATGTATGGTAACAAATGGGCTATGATTGCTAGACTTTTTCCAGGAAGAACAGATAATGCAGTGAAGAATCATTGGCATGTAATCATGGCTAGGAGACATAGGGAACAGTGTAGTGTGTATAGAAGGAGAAAGCCAATTGTTGAAAGCATTTCAAAGGGTTTGAAATTGAGTCTTTCAAATAATGCAGCTAGTGATTCAACTATCTCAAGCAACATTGATGGAAATGCATCAGCTTGTACTAATCTCTCCCTCACTCCTTCTTCAGTTAATCTAAATCCTCAACTGTTTCATAAATTTGTGGCTCCAGTTCAGAATTACCAAGATTTTGGATCACTAATTATGGGTAAGTCTAGAGAAAGTGTGGTTGCAACTAGGGATGTGAGTTTTGACAAATATTTTGGAGCTAGTAAGAAGCAAGAACAAGTGGAAAAGCTAAAGGTAATAGATGTGGTCCAGTCCAATTTTTCAGATTCAAACTCAGAAGTATCAGCATCTGAGTCAGTTACAACCAATAGGTCCAATATCTCAATTTCTGGTGAAAGTGAAAATGTTGGTATTAAGATTAACATGTTACCATTCATTGATTTTCTTGGAGTAGGAGCTACACATAGCTAA 1089 0.3737 MMSSQTFNNGDMALFPLSPIPSSLTNPEMGLQILRPSLFQSKEMIMRETKEEDAYFGIQSKNLSLKLGDEVEEEKSSVPVKIGYSKLCSRGHWRPAEDSKLKELVAEFGPQNWNLIAEHLDGRSGKSCRLRWFNQLDPRINKRTFSEEEEERLLAAHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRHREQCSVYRRRKPIVESISKGLKLSLSNNAASDSTISSNIDGNASACTNLSLTPSSVNLNPQLFHKFVAPVQNYQDFGSLIMGKSRESVVATRDVSFDKYFGASKKQEQVEKLKVIDVVQSNFSDSNSEVSASESVTTNRSNISISGESENVGIKINMLPFIDFLGVGATHS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02864 362 Pfam Myb-like DNA-binding domain 143 185 IPR001005 -
Trre14g02864 362 Pfam Myb-like DNA-binding domain 90 136 IPR001005 -
Trre14g02864 362 FunFam MYB transcription factor 143 212 - -
Trre14g02864 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 191 IPR017930 -
Trre14g02864 362 FunFam MYB transcription factor 90 141 - -
Trre14g02864 362 ProSiteProfiles Myb-like domain profile. 137 187 IPR001005 -
Trre14g02864 362 ProSiteProfiles Myb-like domain profile. 90 136 IPR001005 -
Trre14g02864 362 CDD SANT 93 134 IPR001005 -
Trre14g02864 362 SUPERFAMILY Homeodomain-like 90 183 IPR009057 -
Trre14g02864 362 SMART sant 141 189 IPR001005 -
Trre14g02864 362 SMART sant 89 138 IPR001005 -
Trre14g02864 362 CDD SANT 153 184 IPR001005 -
Trre14g02864 362 Gene3D - 90 141 - -
Trre14g02864 362 Gene3D - 143 202 - -
Trre14g02864 362 PANTHER MYB PROTEIN-RELATED 90 293 - -
Trre14g02864 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 136 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02864 Trre-Chr14 30298018 30299757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02864 85 254 MYB Transcription Factor Family AT5G17800 59.887 1.85e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g02864 Myb_DNA-bind_6 5.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02864 K09422 - gmx:100791795 389.808