Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02860 ATGGCTTCTTCATCAAAAACAAGATCATGGAAGAGGGGGACAAAGGCTACAAGGAGTTCAACTTTTCGAACCATTGTTTTTCCAGATCAGGCAAAGATTGAGATCCCAGCAGACTTTAAGGCTGCATGGTTTAAGGAATTGAGCTATCATGCATTTGCCATGTTAGCACATCCAAATGGCAATCAAGCCTTCCTTGGGCTGGAAGTTTCGAAAACTAAGAGTTTCATAACTGGTGGAAAAGAAGCTGCACTTTTGTATGGCTTTACTGAGCCAACTGAAGTAACTGTTGGGATGGAAATAGATGGTGAGGACAATGATATCTTCTTTCAATTTAGAGACTTTCCAAATTATTCTGAAGATGAAGACATGTTTGTCTCTGACACTCCAGAGTACTGTCTCCATCCATTTGATAAGGATGATGTTTTTGGTTGGGAAAAGACAATCAAAACTACTACAACTCAAGTAGCTCATTTCCCACCCAGAACTGCTGCTGGGGTGGTGAGAGACATGAAAAAAATTAAAATACGTACAAGACATAATGGGGACAACACCGACTGTACAATTGTTTCGTACCAAAGAGTCCGAGGTGGTCCGGTTGAAATGTACATGACCAAAGGATGGTATGAATTTTGCAGAGCTAACAATCTAAATGTTGGAGACAAAGTCCAATTCCAGGTTTCCGATCCTCCGTATGCGGTGGTTCTTGATATTGTGAGGAACCCCTTAAATGTTTAA 735 0.4082 MASSSKTRSWKRGTKATRSSTFRTIVFPDQAKIEIPADFKAAWFKELSYHAFAMLAHPNGNQAFLGLEVSKTKSFITGGKEAALLYGFTEPTEVTVGMEIDGEDNDIFFQFRDFPNYSEDEDMFVSDTPEYCLHPFDKDDVFGWEKTIKTTTTQVAHFPPRTAAGVVRDMKKIKIRTRHNGDNTDCTIVSYQRVRGGPVEMYMTKGWYEFCRANNLNVGDKVQFQVSDPPYAVVLDIVRNPLNV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02860 244 Pfam B3 DNA binding domain 190 228 IPR003340 GO:0003677
Trre14g02860 244 Gene3D - 141 240 IPR015300 -
Trre14g02860 244 ProSiteProfiles B3 DNA-binding domain profile. 201 241 IPR003340 GO:0003677
Trre14g02860 244 SUPERFAMILY DNA-binding pseudobarrel domain 192 231 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02860 Trre-Chr14 30252980 30254563 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre14g02860 B3 3.1e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02860 - K00835 tpra:123886203 186.037