Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02847 ATGTCTGAGACTGAGAAGAATCCTGGTATTAGGCTATTTGGGTGGAAGATTCCGGTGCCGGAATGTCAAATTCCGACCAACTATGGACCCATGGATACTTGCAGCAGTACAAAGAAAACCGATGTCGAAATACTTTGTGCAGAAAAAACTGTGCAACAAGACAATTCTTCTGATTCAATGGATAGTAAACAAGAGTCCCATCAAGATATGCAACAAAAGGAGCCAATAGAAAATTCCAAGTCCGCCGACGATAATACAGAGACTGGTAATTCGGATGAAGATAAAATTTTAAAGAAACCAGACAAGATTGTTCAGTGTCCGCGTTGCAAAAGTTGGGATACCAAGTTTTGTTATTTCAACAACTATAACGTCAACCAACCTCGGCATTTTTGCAAGAATTGTCAAAGGTATTGGACAGCTGGTGGAACGATGAGAAATGTTCCGATAGGTGCTGGTAGGCGGAAGAATAAGCATCTAGCTTCTCAATACCGACAAATTATAGTAACCTCGGACGGAATTCCAACCTCGAGGCTTGAAACAACACCCTCATCCACTCATCACCATACATCAATGGATAACGAGACTGTATTGAAATTTGGTCCCGATACCCCTCTTTGTGAATCGATGGAGTCGATGCTTCATCTTAAAGACCAGAAAAGGAGTTCTGATGCAAATTCCATTAGTTGTGTGCAACATAGAGAGGAACCGTCCCTCTATGGATCATCGGTAGCAAATACCAACACTCAAGGAAATGAAGTATCAGAACACAATGCACCAAATTGGTTGCAGTGTTATCCTGTTCCTCCATGGGTATTACCAATGAATCCGGGTTGGAATATGAATAATGTTGCTTCCATGGCAGCAGTTCATCCGACTTCAGCATCCATATGCAACCCGTATAGCACTGTTCCAACTACGATGCAATGGTGTCCGACACCTATGTTGGCAATTCCGGGAATTAGGCCACAAAACATACCTTTGCAACTTGTACCAGCATCAAACTGGAGCGGACCATCACTTTGCCTCTCGCCGCCTTCCTCCACAAGTAACAGTTGCTGCACAGGTAATGGCTCGGCAACCCTAGGAAAACACACTAGAGACACCATTTTCGCAGACGAAGATAAATCAGACAAGTGTGTTCCGGTTCGAAAAACGATAAGAATTAATGTCACAAATGAGGGCCCGATAAGTCCTACTCGGGCCACAATAGCTAACAAGACGCCAACTTAG 1230 0.435 MSETEKNPGIRLFGWKIPVPECQIPTNYGPMDTCSSTKKTDVEILCAEKTVQQDNSSDSMDSKQESHQDMQQKEPIENSKSADDNTETGNSDEDKILKKPDKIVQCPRCKSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQIIVTSDGIPTSRLETTPSSTHHHTSMDNETVLKFGPDTPLCESMESMLHLKDQKRSSDANSISCVQHREEPSLYGSSVANTNTQGNEVSEHNAPNWLQCYPVPPWVLPMNPGWNMNNVASMAAVHPTSASICNPYSTVPTTMQWCPTPMLAIPGIRPQNIPLQLVPASNWSGPSLCLSPPSSTSNSCCTGNGSATLGKHTRDTIFADEDKSDKCVPVRKTIRINVTNEGPISPTRATIANKTPT 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02847 409 ProSitePatterns Zinc finger Dof-type signature. 106 142 IPR003851 GO:0003677|GO:0006355
Trre14g02847 409 MobiDBLite consensus disorder prediction 49 96 - -
Trre14g02847 409 PANTHER CYCLIC DOF FACTOR 2 1 403 IPR045174 GO:0003700|GO:0006355
Trre14g02847 409 Pfam Dof domain, zinc finger 101 158 IPR003851 GO:0003677|GO:0006355
Trre14g02847 409 ProSiteProfiles Zinc finger Dof-type profile. 104 158 IPR003851 GO:0003677|GO:0006355
Trre14g02847 409 MobiDBLite consensus disorder prediction 60 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02847 Trre-Chr14 29922391 29924630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02847 7 406 C2C2-Dof Transcription Factor Family AT5G39660 31.360 1.23e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre14g02847 zf-Dof 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02847 - - cam:101500722 611.683